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Comment: C: querying blast database for rna seq reads
8.1 years ago by Varun Gupta ★ 1.3k
0
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0
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4.0k
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Comment: C: querying blast database for rna seq reads
8.1 years ago by Varun Gupta ★ 1.3k
0
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9
replies
4.0k
views
querying blast database for rna seq reads
blast blastn RNA-Seq
updated 8.1 years ago by 153k • written 8.1 years ago by ★ 1.3k
0
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0
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7.7k
views
Comment: Comment: Any tools to quantify intron retention in RNAseq data?
updated 4.0 years ago by 45k • written 8.1 years ago by ★ 1.3k
0
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0
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2.4k
views
Comment: C: exon quantification for tissue samples
8.6 years ago by Varun Gupta ★ 1.3k
2
votes
2
replies
2.4k
views
exon quantification for tissue samples
RNA-Seq exon count splice
updated 8.6 years ago by 7.6k • written 8.6 years ago by ★ 1.3k
13
votes
17
replies
14k
views
8 follow
cutadapt for trimming reads to specific length
cutadapt trim-galore
updated 19 months ago by ▴ 140 • written 8.9 years ago by ★ 1.3k
0
votes
1
reply
3.1k
views
genomeCoverageBed : for fixed size bins
bedtools
updated 8.7 years ago by ▴ 610 • written 8.7 years ago by ★ 1.3k
0
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0
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14k
views
Comment: C: cutadapt for trimming reads to specific length
8.9 years ago by Varun Gupta ★ 1.3k
0
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0
replies
14k
views
Comment: C: cutadapt for trimming reads to specific length
8.9 years ago by Varun Gupta ★ 1.3k
1
vote
0
replies
14k
views
Comment: C: cutadapt for trimming reads to specific length
8.9 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
14k
views
Comment: C: cutadapt for trimming reads to specific length
8.9 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
14k
views
Comment: C: cutadapt for trimming reads to specific length
8.9 years ago by Varun Gupta ★ 1.3k
16
votes
37
replies
22k
views
7 follow
extracting the soft clipped seq only from a sam file
sam bam soft clip
updated 9.2 years ago by 20 • written 10.7 years ago by ★ 1.3k
0
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0
replies
3.0k
views
Comment: C: extracting matched part(M) only for the sequence from the CIGAR string
9.5 years ago by Varun Gupta ★ 1.3k
0
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3
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3.0k
views
extracting matched part(M) only for the sequence from the CIGAR string
bam
9.5 years ago by Varun Gupta ★ 1.3k
4
votes
7
replies
5.2k
views
sam flag from paired end reads
bam
updated 9.5 years ago by 13k • written 9.5 years ago by ★ 1.3k
0
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1
reply
5.2k
views
Comment: C: sam flag from paired end reads
9.5 years ago by Varun Gupta ★ 1.3k
0
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1
reply
3.7k
views
Comment: C: bedtools multicov not running
9.5 years ago by Varun Gupta ★ 1.3k
0
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2
replies
3.2k
views
Alternative Splice Reads
updated 9.5 years ago by ▴ 160 • written 13.5 years ago by ★ 1.3k
13
votes
13
replies
7.6k
views
7 follow
Making TSS plots for some genes for a particular histone mark
ChIP-Seq TSS
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 1.3k
14
votes
3
replies
18k
views
Mismatch Option In Bowtie2
bowtie2
written 12.2 years ago by ★ 1.3k
1
vote
1
reply
4.2k
views
How To Make Use Of The Cufflinks Output In Further Analysis
cufflinks
updated 9.7 years ago by 20 • written 12.5 years ago by ★ 1.3k
0
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1
reply
3.0k
views
Removing low quality ends from a fastq file
RNA-Seq trimming
updated 3.0 years ago by 45k • written 10.0 years ago by ★ 1.3k
0
votes
0
replies
7.6k
views
Comment: Comment: Making TSS plots for some genes for a particular histone mark
updated 3.0 years ago by 45k • written 10.0 years ago by ★ 1.3k
0
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1
reply
4.7k
views
Comment: Comment: Extracting counts from RNA-Seq: trouble with bedtools + multicov
updated 3.0 years ago by 45k • written 10.0 years ago by ★ 1.3k
0
votes
0
replies
2.9k
views
Comment: Comment: Using bowtie with different mismatch options
updated 3.0 years ago by 45k • written 10.1 years ago by ★ 1.3k
0
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1
reply
7.6k
views
Comment: C: Making TSS plots for some genes for a particular histone mark
10.1 years ago by Varun Gupta ★ 1.3k
0
votes
2
replies
2.9k
views
Using bowtie with different mismatch options
bowtie
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 1.3k
1
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0
replies
2.4k
views
Answer: Answer: Tools to "bin" DNA methylation reads into different areas of gene structure
updated 2.8 years ago by 45k • written 10.2 years ago by ★ 1.3k
0
votes
1
reply
30k
views
Comment: Comment: Remove duplicates in fasta file based on ID
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 1.3k
2
votes
1
reply
30k
views
Comment: Comment: Remove duplicates in fasta file based on ID
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 1.3k
2
votes
1
reply
30k
views
Answer: Answer: Remove duplicates in fasta file based on ID
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 1.3k
1
vote
0
replies
28k
views
Answer: Answer: searching reads with a certain sequence in fastq file
updated 3.7 years ago by 45k • written 10.4 years ago by ★ 1.3k
0
votes
0
replies
5.2k
views
Comment: Comment: How to select two reads to be processed through STAR?
updated 3.3 years ago by 45k • written 10.4 years ago by ★ 1.3k
0
votes
2
replies
3.2k
views
Mapping Issues with Bowtie2
bowtie2 chimera
updated 3.3 years ago by 45k • written 10.5 years ago by ★ 1.3k
0
votes
1
reply
21k
views
Comment: C: Is There Any Other Method For Isoform-Level Differential Expression Analysis Exc
10.5 years ago by Varun Gupta ★ 1.3k
1
vote
1
reply
1.7k
views
differential splicing for subset of genes
differential-splicing
updated 3.3 years ago by 45k • written 10.5 years ago by ★ 1.3k
1
vote
1
reply
5.2k
views
Answer: Answer: How to select two reads to be processed through STAR?
updated 3.3 years ago by 45k • written 10.5 years ago by ★ 1.3k
8
votes
4
replies
6.1k
views
Why Is Tophat Reporting Secondary Alignments Even When The Option To Do So Is Turned Off
tophat2
updated 3.7 years ago by 45k • written 12.6 years ago by ★ 1.3k
2
votes
1
reply
10k
views
Answer: C: Calculate percentage of bases covered less than nX in targeted sequencing experi
10.7 years ago by Varun Gupta ★ 1.3k
0
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2
replies
22k
views
Comment: C: extracting the soft clipped seq only from a sam file
10.7 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
22k
views
Comment: C: extracting the soft clipped seq only from a sam file
10.7 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
3.1k
views
Comment: C: Bedtools - Errors in coveragedBed
10.7 years ago by Varun Gupta ★ 1.3k
0
votes
0
replies
3.8k
views
Comment: Comment: Yeast genome SK1 strain
updated 3.5 years ago by 45k • written 10.8 years ago by ★ 1.3k
3
votes
2
replies
3.8k
views
Yeast genome SK1 strain
fasta yeast genome
updated 3.5 years ago by 45k • written 10.8 years ago by ★ 1.3k
1
vote
2
replies
2.6k
views
RNA Seq datasets for different tissues not Poly-A selected
tissues RNA-Seq
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 1.3k
0
votes
0
replies
3.5k
views
Comment: Comment: Microarray data analysis for detecting alternative splicing
updated 4.5 years ago by 45k • written 10.9 years ago by ★ 1.3k
3
votes
3
replies
3.5k
views
Microarray data analysis for detecting alternative splicing
microarray alternative splicing
updated 4.5 years ago by 45k • written 10.9 years ago by ★ 1.3k
0
votes
0
replies
8.2k
views
Comment: Comment: parallel fastQC computation
updated 4.5 years ago by 45k • written 10.9 years ago by ★ 1.3k
225 results • Page 2 of 5
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