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0
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7.4k
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Comment: C: finding copy number variation from bam file.
11.0 years ago by Varun Gupta ★ 1.3k
1
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4
replies
7.4k
views
finding copy number variation from bam file.
cnv
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 1.3k
1
vote
0
replies
6.3k
views
bwa mem mismatch option
bwa-mem
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 1.3k
0
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1
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2.9k
views
Comment: Comment: Capturing clusters having T to C mutation
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.3k
1
vote
6
replies
2.9k
views
Capturing clusters having T to C mutation
mutation bed
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.3k
0
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1
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2.9k
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Comment: C: Capturing clusters having T to C mutation
11.1 years ago by Varun Gupta ★ 1.3k
0
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0
replies
5.8k
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Comment: Comment: Why Is The Tophat2 Unmapped.Bam File Larger Than The Accepted.Bam File?
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 1.3k
0
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0
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6.5k
views
Comment: Comment: fastq file on the basis of read length
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 1.3k
3
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1
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14k
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Answer: Answer: Converting .sra files to fastq
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 1.3k
2
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3
replies
6.5k
views
bowtie1 -m --best --strata options
bowtie
updated 3.9 years ago by 45k • written 11.3 years ago by ★ 1.3k
0
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1
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45k
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Comment: C: How to extract unique mapped results from Bowtie2 bam results?
11.3 years ago by Varun Gupta ★ 1.3k
1
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2
replies
4.8k
views
Viewing Tf Binding Chip Seq Data From Encode On Igv
igv
updated 11.3 years ago by 11k • written 11.5 years ago by ★ 1.3k
0
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3
replies
14k
views
padj value in DEseq package
RNA-Seq DEseq
updated 4.0 years ago by 45k • written 11.4 years ago by ★ 1.3k
0
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0
replies
3.4k
views
Comment: C: Rpkm Computation
11.4 years ago by Varun Gupta ★ 1.3k
0
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1
reply
27k
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Comment: C: Bwa Mem -M Option
11.4 years ago by Varun Gupta ★ 1.3k
26
votes
9
replies
12k
views
Bowtie Vs Bwa For Indels
bowtie bwa
updated 11.4 years ago by 33k • written 11.5 years ago by ★ 1.3k
0
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1
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12k
views
Comment: C: Bowtie Vs Bwa For Indels
11.5 years ago by Varun Gupta ★ 1.3k
0
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0
replies
19k
views
Comment: C: In Cigar String, What Is The Difference Between 'N' And 'D' ?
11.5 years ago by Varun Gupta ★ 1.3k
0
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1
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5.3k
views
Comment: C: Rna Seq Short Rna Alignment With Rsubread Package In R
11.5 years ago by Varun Gupta ★ 1.3k
13
votes
12
replies
9.5k
views
7 follow
Fastqc To Check The Quality Of High Throughput Sequence
fastqc illumina rna-seq
updated 3.5 years ago by 45k • written 13.3 years ago by ★ 1.3k
0
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1
reply
2.6k
views
Hmmsplicer Junctions
hmm
updated 11.6 years ago by • 0 • written 13.2 years ago by ★ 1.3k
0
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1
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12k
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Comment: C: Is They Any Software Or Technique To Find The Number Of Reads Mapped To Each Con
11.6 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
12k
views
Comment: C: Is They Any Software Or Technique To Find The Number Of Reads Mapped To Each Con
11.6 years ago by Varun Gupta ★ 1.3k
0
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1
reply
12k
views
Comment: C: Is They Any Software Or Technique To Find The Number Of Reads Mapped To Each Con
11.6 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
12k
views
Comment: C: Is They Any Software Or Technique To Find The Number Of Reads Mapped To Each Con
11.6 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
12k
views
Comment: C: Is They Any Software Or Technique To Find The Number Of Reads Mapped To Each Con
11.6 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
12k
views
Comment: C: Is They Any Software Or Technique To Find The Number Of Reads Mapped To Each Con
11.6 years ago by Varun Gupta ★ 1.3k
3
votes
0
replies
24k
views
Answer: A: Understanding Fastqc Output- Please Help
11.6 years ago by Varun Gupta ★ 1.3k
3
votes
9
replies
13k
views
Genomecoveragebed - Bedtool For Reporting Per Base Genome Coverage
bedtools coverage
updated 11.7 years ago by • 0 • written 13.6 years ago by ★ 1.3k
0
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1
reply
12k
views
Answer: Answer: Is They Any Software Or Technique To Find The Number Of Reads Mapped To Each Con
updated 2.5 years ago by 45k • written 11.7 years ago by ★ 1.3k
6
votes
1
reply
10k
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Answer: A: Help With Perl Script: Store Fasta Sequences Into A Hash.
11.7 years ago by Varun Gupta ★ 1.3k
0
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1
reply
14k
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Comment: C: How To Understand The Encoding And Trim Their Adapters
11.7 years ago by Varun Gupta ★ 1.3k
0
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0
replies
4.6k
views
Answer: A: What Will Happen If One Read Can Map To Two Regions?
11.7 years ago by Varun Gupta ★ 1.3k
0
votes
3
replies
4.2k
views
Seed Search Of Pattern Sequence In A Given Fasta File Database
search
updated 11.7 years ago by ★ 1.9k • written 11.7 years ago by ★ 1.3k
5
votes
8
replies
6.3k
views
7 follow
Htseq Count Sam
htseq counts
updated 11.9 years ago by ★ 7.8k • written 13.5 years ago by ★ 1.3k
8
votes
4
replies
3.8k
views
Pombe Intron Locations
intron coordinates
updated 12.0 years ago by 20 • written 13.6 years ago by ★ 1.3k
2
votes
7
replies
4.1k
views
Can I Use The Gatk Snp Calling On Sam Files With Missing Quality Values
gatk
updated 12.0 years ago by 20 • written 12.1 years ago by ★ 1.3k
0
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1
reply
5.0k
views
Comment: C: Plot Read Count Over Exons For A Gene
12.1 years ago by Varun Gupta ★ 1.3k
0
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0
replies
4.1k
views
Comment: C: Can I Use The Gatk Snp Calling On Sam Files With Missing Quality Values
12.1 years ago by Varun Gupta ★ 1.3k
0
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1
reply
4.1k
views
Comment: C: Can I Use The Gatk Snp Calling On Sam Files With Missing Quality Values
12.1 years ago by Varun Gupta ★ 1.3k
0
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1
reply
4.1k
views
Comment: C: Can I Use The Gatk Snp Calling On Sam Files With Missing Quality Values
12.1 years ago by Varun Gupta ★ 1.3k
0
votes
1
reply
5.0k
views
Comment: C: Plot Read Count Over Exons For A Gene
12.2 years ago by Varun Gupta ★ 1.3k
31
votes
9
replies
25k
views
7 follow
Genotype Likelihoods
genotype
updated 12.2 years ago by ▴ 700 • written 12.2 years ago by ★ 1.3k
4
votes
4
replies
8.4k
views
Finding Snps From A Bam File
snps
updated 12.3 years ago by 166k • written 12.3 years ago by ★ 1.3k
2
votes
0
replies
41k
views
Comment: C: How To Get Mapping Statistics On Bam File
12.4 years ago by Varun Gupta ★ 1.3k
2
votes
4
replies
6.5k
views
Removing Reads Which Have Adapter Sequences
adaptor
updated 12.5 years ago by ▴ 840 • written 12.5 years ago by ★ 1.3k
0
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1
reply
6.5k
views
Comment: C: Removing Reads Which Have Adapter Sequences
12.5 years ago by Varun Gupta ★ 1.3k
9
votes
6
replies
7.7k
views
Upregulated And Downregulated Genes
differential expression
updated 12.5 years ago by ★ 1.3k • written 12.5 years ago by ★ 1.3k
0
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1
reply
7.7k
views
Comment: C: Upregulated And Downregulated Genes
12.5 years ago by Varun Gupta ★ 1.3k
6
votes
4
replies
18k
views
Bowtie For Rna Seq Data
bowtie
updated 12.6 years ago by 33k • written 12.6 years ago by ★ 1.3k
225 results • Page 3 of 5
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