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5
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How to subset DESeq2 results
DESEq2 GSEA
updated 5.5 years ago by 13k • written 5.5 years ago by ▴ 410
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0
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2.5k
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Comment: C: Gene set enrichment analysis input data
5.5 years ago by ATCG ▴ 410
2
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4
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2.5k
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Gene set enrichment analysis input data
GSE DESeq2
5.5 years ago by ATCG ▴ 410
1
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1
reply
1.5k
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Infer strandedness of my single-end RNA-Seq data
RNA-Seq HISAT2 strandedness
updated 5.5 years ago by ★ 4.2k • written 5.5 years ago by ▴ 410
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0
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19k
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Comment: C: Which strand specific option need to be used with HISAT2?
5.5 years ago by ATCG ▴ 410
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0
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4.1k
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Comment: C: File conversion in bash, discrepancy in number of lines after conversion.
5.5 years ago by ATCG ▴ 410
0
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1
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4.1k
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Comment: C: File conversion in bash, discrepancy in number of lines after conversion.
5.5 years ago by ATCG ▴ 410
0
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0
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4.1k
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Comment: C: File conversion in bash, discrepancy in number of lines after conversion.
5.5 years ago by ATCG ▴ 410
0
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0
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4.1k
views
Comment: C: File conversion in bash, discrepancy in number of lines after conversion.
5.5 years ago by ATCG ▴ 410
0
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1
reply
4.1k
views
Comment: C: File conversion in bash, discrepancy in number of lines after conversion.
5.5 years ago by ATCG ▴ 410
0
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1
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4.1k
views
Comment: C: File conversion in bash, discrepancy in number of lines after conversion.
5.5 years ago by ATCG ▴ 410
17
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26
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4.1k
views
File conversion in bash, discrepancy in number of lines after conversion.
bash
updated 2.6 years ago by 45k • written 5.5 years ago by ▴ 410
0
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3
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4.1k
views
Comment: C: file conversion in bash
5.5 years ago by ATCG ▴ 410
0
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2
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4.1k
views
Comment: C: file conversion in bash
5.5 years ago by ATCG ▴ 410
0
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1
reply
4.1k
views
Comment: C: file conversion in bash
5.5 years ago by ATCG ▴ 410
0
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1
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4.1k
views
Comment: C: file conversion in bash
5.5 years ago by ATCG ▴ 410
1
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0
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4.6k
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Comment: C: ReactomePA enrichPathway function
5.5 years ago by ATCG ▴ 410
0
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1
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217k
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Answer: A: The Biostar Handbook. A bioinformatics e-book for beginners.
5.5 years ago by ATCG ▴ 410
0
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2
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4.6k
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Comment: C: ReactomePA enrichPathway function
5.5 years ago by ATCG ▴ 410
0
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1
reply
8.3k
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Comment: C: Selecting the background for GO enrichment analysis (proteomics)
5.5 years ago by ATCG ▴ 410
0
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1
reply
8.3k
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Comment: C: Selecting the background for GO enrichment analysis (proteomics)
5.5 years ago by ATCG ▴ 410
0
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0
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35k
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Comment: C: Selection Of Background Gene Set In Enrichment Analysis
5.5 years ago by ATCG ▴ 410
1
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6
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1.4k
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Filter fastq files
Fastq trimmomatic
updated 5.5 years ago by 103k • written 5.5 years ago by ▴ 410
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0
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1.4k
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Comment: C: Filter fastq files
5.5 years ago by ATCG ▴ 410
0
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0
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1.6k
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Comment: A: over-represented is not removed after trimmomatic
5.5 years ago by ATCG ▴ 410
0
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2
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1.6k
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over-represented is not removed after trimmomatic
trimmomatic fastqc
5.5 years ago by ATCG ▴ 410
2
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2
replies
1.4k
views
Is indexing a genome the same as annotating a genome?
samtools index genome indexing
5.6 years ago by ATCG ▴ 410
0
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0
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6.0k
views
Comment: C: DESeq2 Error: package or namespace load failed for 'DESeq2'
5.6 years ago by ATCG ▴ 410
2
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4
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6.0k
views
DESeq2 Error: package or namespace load failed for 'DESeq2'
RNA-Seq DESeq2 image not found
updated 5.6 years ago by 4.1k • written 5.6 years ago by ▴ 410
0
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1
reply
2.5k
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Comment: C: Drosophila reference genomes
5.6 years ago by ATCG ▴ 410
0
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1
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1.4k
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Comment: C: How to recognize single-end fastq files
5.6 years ago by ATCG ▴ 410
2
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2
replies
4.7k
views
Do illumina instruments generate four fastq files per sample?
Fasq Illumina lane
updated 5.6 years ago by 154k • written 5.6 years ago by ▴ 410
2
votes
4
replies
1.4k
views
How to recognize single-end fastq files
RNA-Seq Fastq single-end
updated 5.6 years ago by 154k • written 5.6 years ago by ▴ 410
0
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0
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2.3k
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Comment: C: Pathway vs Network
5.6 years ago by ATCG ▴ 410
5
votes
2
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2.3k
views
Pathway vs Network
Pathway Networks RNA-Seq
updated 5.6 years ago by 22k • written 5.6 years ago by ▴ 410
0
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0
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2.5k
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Comment: C: Drosophila reference genomes
5.6 years ago by ATCG ▴ 410
0
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2
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2.5k
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Comment: C: Drosophila reference genomes
5.6 years ago by ATCG ▴ 410
8
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8
replies
2.5k
views
Drosophila reference genomes
genome Drosophila Model organisms Annotation
updated 5.6 years ago by 154k • written 5.6 years ago by ▴ 410
2
votes
2
replies
5.5k
views
Download NCBI GEO dataset
RNA-Seq GEO GSE
updated 5.6 years ago by ▴ 570 • written 5.6 years ago by ▴ 410
0
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0
replies
11k
views
Comment: C: Remove Blacklist regions from ChIP-seq Data
updated 6.1 years ago by 45k • written 9.3 years ago by ▴ 410
0
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3
replies
1.4k
views
Extracting related sequences from a FASTA file
Sequence comparizon Data mining kmer
updated 6.8 years ago by 20 • written 6.9 years ago by ▴ 410
1
vote
3
replies
4.9k
views
Filter out related individuals from a vcf file using Plink or Hail
Hail Plink VCF
updated 6.9 years ago by 12k • written 8.0 years ago by ▴ 410
4
votes
6
replies
3.1k
views
Bulk primer design
primers bulk FASTA kmer
updated 6.9 years ago by 166k • written 6.9 years ago by ▴ 410
0
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1
reply
1.7k
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Comment: C: where to keep scripts for new software
7.1 years ago by ATCG ▴ 410
1
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4
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1.7k
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where to keep scripts for new software
$PATH Unix install
7.1 years ago by ATCG ▴ 410
4
votes
0
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209k
views
Answer: A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
updated 7.1 years ago by 12k • written 8.1 years ago by ▴ 410
0
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0
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1.7k
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Comment: C: Pacbio inversion visualization and IGV
7.1 years ago by ATCG ▴ 410
4
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3
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3.3k
views
GMAP download page
RNA-Seq GMAP PacBio
7.1 years ago by ATCG ▴ 410
0
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1
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3.3k
views
Comment: C: GMAP download page
7.1 years ago by ATCG ▴ 410
5
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8
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3.7k
views
differential gene expression analysis
confounders RNA-Seq Limma EdgeR Regression
7.5 years ago by ATCG ▴ 410
167 results • Page 2 of 4
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