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2
votes
3
replies
1.9k
views
How to increase speed of BBMap's `reformat.sh` when randomly sampling reads?
RNA-Seq sequencing bbmap fastq
6.0 years ago by O.rka ▴ 750
2
votes
1
reply
1.5k
views
How to use anvio's gzipped HMM externally with HMMER?
anvio binning hmm
updated 6.0 years ago by 35k • written 6.0 years ago by ▴ 750
0
votes
0
replies
4.4k
views
Comment: Comment: How to extract protein interactions from a reactome biopax file?
updated 3.6 years ago by 45k • written 6.5 years ago by ▴ 750
3
votes
1
reply
1.6k
views
How to download all of the metadata associated with a particular EBI sample informatically?
sequencing next-gen
updated 6.1 years ago by 154k • written 6.1 years ago by ▴ 750
1
vote
2
replies
2.4k
views
Where can I download the gff3 file for a specific human genome build? (hg38 release 77)
genome Assembly database
updated 6.1 years ago by 9.3k • written 6.1 years ago by ▴ 750
3
votes
2
replies
4.4k
views
Is there a step-by-step tutorial on creating gene models for protists? (Maker?)
genome Assembly
updated 6.2 years ago by 5.9k • written 6.2 years ago by ▴ 750
0
votes
0
replies
3.6k
views
Comment: C: UK biobank HLA imputation data
6.2 years ago by O.rka ▴ 750
0
votes
0
replies
22k
views
Comment: C: bwa mem and multiply mapped reads
6.3 years ago by O.rka ▴ 750
0
votes
1
reply
22k
views
Comment: C: bwa mem and multiply mapped reads
6.3 years ago by O.rka ▴ 750
0
votes
0
replies
6.6k
views
Comment: C: BBTools/BBMap/BBSuite's sketch.sh and sendsketch.sh are inconsistent
6.3 years ago by O.rka ▴ 750
0
votes
0
replies
6.6k
views
Comment: C: BBTools/BBMap/BBSuite's sketch.sh and sendsketch.sh are inconsistent
6.3 years ago by O.rka ▴ 750
0
votes
1
reply
6.6k
views
Comment: C: BBTools/BBMap/BBSuite's sketch.sh and sendsketch.sh are inconsistent
6.3 years ago by O.rka ▴ 750
0
votes
1
reply
5.4k
views
Comment: C: Transcriptome Assembly with rnaSPAdes
6.3 years ago by O.rka ▴ 750
0
votes
1
reply
6.6k
views
Comment: C: BBTools/BBMap/BBSuite's sketch.sh and sendsketch.sh are inconsistent
6.3 years ago by O.rka ▴ 750
0
votes
1
reply
6.6k
views
Comment: C: BBTools/BBMap/BBSuite's sketch.sh and sendsketch.sh are inconsistent
6.3 years ago by O.rka ▴ 750
0
votes
1
reply
17k
views
Comment: C: BBSketch - A Tool for Rapid Sequence Comparison
6.3 years ago by O.rka ▴ 750
0
votes
0
replies
6.6k
views
Comment: C: BBTools/BBMap/BBSuite's sketch.sh and sendsketch.sh are inconsistent
6.3 years ago by O.rka ▴ 750
0
votes
1
reply
6.6k
views
Comment: C: BBTools/BBMap/BBSuite's sketch.sh and sendsketch.sh are inconsistent
6.3 years ago by O.rka ▴ 750
2
votes
13
replies
6.6k
views
BBTools/BBMap/BBSuite's sketch.sh and sendsketch.sh are inconsistent
bbmap kmer sketch bbtools bbsuite
6.3 years ago by O.rka ▴ 750
0
votes
0
replies
2.6k
views
Comment: C: Randomly got the following error: CRITICAL: Error executing: kneaddata_bowtie2_d
6.3 years ago by O.rka ▴ 750
0
votes
1
reply
2.6k
views
Randomly got the following error: CRITICAL: Error executing: kneaddata_bowtie2_discordant_pairs but all the files before look fine?
Assembly
6.3 years ago by O.rka ▴ 750
0
votes
0
replies
965
views
How to extract "Genetic Regulation Schematic" network edges from EcoCyc flat files?
genome
updated 6.3 years ago by 20 • written 6.5 years ago by ▴ 750
1
vote
1
reply
12k
views
Comment: C: fastq-dump timeout exhausted error
6.4 years ago by O.rka ▴ 750
0
votes
0
replies
12k
views
Comment: C: fastq-dump timeout exhausted error
6.4 years ago by O.rka ▴ 750
1
vote
3
replies
18k
views
Answer: A: How To Merge Gff Files
updated 6.4 years ago by 48k • written 6.4 years ago by ▴ 750
0
votes
0
replies
701
views
What tool can compute SNPs from a set of assemblies and output the SNPs into a dataframe?
Assembly
6.4 years ago by O.rka ▴ 750
0
votes
0
replies
2.8k
views
Comment: C: Can any long read assemblers incorporate both nanopore and pacbio reads in the s
6.4 years ago by O.rka ▴ 750
0
votes
0
replies
2.8k
views
Comment: C: Can any long read assemblers incorporate both nanopore and pacbio reads in the s
6.4 years ago by O.rka ▴ 750
0
votes
0
replies
909
views
How to extract best-hit reads from merged sam file with multiple hits per read?
alignment
6.4 years ago by O.rka ▴ 750
2
votes
7
replies
2.8k
views
Can any long read assemblers incorporate both nanopore and pacbio reads in the same run?
Assembly
updated 3.2 years ago by • 0 • written 6.4 years ago by ▴ 750
0
votes
0
replies
2.8k
views
Comment: C: Can any long read assemblers incorporate both nanopore and pacbio reads in the s
6.4 years ago by O.rka ▴ 750
1
vote
1
reply
4.6k
views
Comment: C: Where can I download GO terms and their associated E. coli genes?
6.5 years ago by O.rka ▴ 750
0
votes
1
reply
4.6k
views
Comment: C: Where can I download GO terms and their associated E. coli genes?
6.5 years ago by O.rka ▴ 750
0
votes
1
reply
4.6k
views
Comment: C: Where can I download GO terms and their associated E. coli genes?
6.5 years ago by O.rka ▴ 750
4
votes
8
replies
4.6k
views
Where can I download GO terms and their associated E. coli genes?
gene
updated 6.5 years ago by 7.6k • written 6.5 years ago by ▴ 750
2
votes
8
replies
4.1k
views
Is it possible to use genomic reads from PacBio and Nanopore with Illumina RNA-seq reads for de-novo assembly?
Assembly
updated 2.8 years ago by ▴ 40 • written 6.5 years ago by ▴ 750
0
votes
1
reply
4.1k
views
Comment: C: Is it possible to use genomic reads from PacBio and Nanopore with Illumina RNA-s
6.5 years ago by O.rka ▴ 750
0
votes
0
replies
2.5k
views
Comment: C: Is there a preferred RNA-seq aligner for (very) short reads and potential homolo
6.5 years ago by O.rka ▴ 750
0
votes
0
replies
4.1k
views
Comment: C: Is it possible to use genomic reads from PacBio and Nanopore with Illumina RNA-s
6.5 years ago by O.rka ▴ 750
2
votes
2
replies
2.2k
views
What are the benefits of RNA-seq aligners that use GTF over just mapping to transcripts?
rna-seq
updated 6.5 years ago by 20 • written 6.5 years ago by ▴ 750
0
votes
0
replies
2.5k
views
Comment: C: Is there a preferred RNA-seq aligner for (very) short reads and potential homolo
6.5 years ago by O.rka ▴ 750
0
votes
1
reply
2.5k
views
Comment: C: Is there a preferred RNA-seq aligner for (very) short reads and potential homolo
6.5 years ago by O.rka ▴ 750
0
votes
7
replies
2.5k
views
Is there a preferred RNA-seq aligner for (very) short reads and potential homologous regions?
RNA-Seq
updated 6.5 years ago by 15k • written 6.5 years ago by ▴ 750
8
votes
3
replies
14k
views
Does Gene length corrected TMM [GeTMM] violate any assumptions of TMM normalization?
RNA-Seq
updated 6.5 years ago by 16k • written 6.5 years ago by ▴ 750
2
votes
2
replies
1.1k
views
How to get annotation information from identifiers in NCBI nt database?
assembly
updated 6.5 years ago by 154k • written 6.5 years ago by ▴ 750
2
votes
3
replies
2.8k
views
In BBMap suite, is minid or minratio prioritized?
alignment
6.5 years ago by O.rka ▴ 750
2
votes
0
replies
2.8k
views
Answer: A: In BBMap suite, is minid or minratio prioritized?
6.5 years ago by O.rka ▴ 750
0
votes
0
replies
2.8k
views
Comment: C: In BBMap suite, is minid or minratio prioritized?
6.5 years ago by O.rka ▴ 750
0
votes
0
replies
1.7k
views
Comment: C: How can I use bedtools complement, sam mapping file, and my gtf file to get numb
6.6 years ago by O.rka ▴ 750
0
votes
1
reply
1.7k
views
Comment: C: How can I use bedtools complement, sam mapping file, and my gtf file to get numb
6.6 years ago by O.rka ▴ 750
410 results • Page 6 of 9
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