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Comment: Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
20 months ago by kk.mahsa ▴ 150
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1.5k
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Comment: Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
20 months ago by kk.mahsa ▴ 150
0
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5
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1.5k
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How to remove homozygous reference genotypes from multi-sample vcf file based on a threshold
CNV VCF Genotype
updated 20 months ago by ★ 4.0k • written 20 months ago by ▴ 150
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0
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958
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Comment: Comment: Missing samples in the output vcf file created using GenotypeGVCFs in GATK
20 months ago by kk.mahsa ▴ 150
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1
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958
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Comment: Comment: Missing samples in the output vcf file created using GenotypeGVCFs in GATK
20 months ago by kk.mahsa ▴ 150
1
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4
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958
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Missing samples in the output vcf file created using GenotypeGVCFs in GATK
SNP GATK
20 months ago by kk.mahsa ▴ 150
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0
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640
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Comment: Comment: f-index in treemix
21 months ago by kk.mahsa ▴ 150
0
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1
reply
640
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f-index in treemix
treemix introgression f-index
21 months ago by kk.mahsa ▴ 150
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0
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704
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Comment: Comment: signature of selection
2.8 years ago by kk.mahsa ▴ 150
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2
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704
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signature of selection
WGS
2.8 years ago by kk.mahsa ▴ 150
25
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15
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20k
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7 follow
how can I remove duplicated variants from vcf file?
SNP vcf
updated 14 months ago by 44k • written 7.3 years ago by ▴ 150
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454
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detection of signature selection using relative individuals
selection WGS
2.9 years ago by kk.mahsa ▴ 150
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0
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908
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Comment: Comment: Counting the number of major and minor alleles
2.9 years ago by kk.mahsa ▴ 150
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2
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908
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Counting the number of major and minor alleles
VCF Allele SNP
2.9 years ago by kk.mahsa ▴ 150
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0
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1.1k
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Comment: Comment: How to convert scaffold name to chromosome number in vcf file
3.0 years ago by kk.mahsa ▴ 150
3
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2
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1.1k
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How to convert scaffold name to chromosome number in vcf file
VCF Scaffold Chromosome
3.0 years ago by kk.mahsa ▴ 150
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0
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438
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PLINK map format spliiting by chromosome
Splitting mapfile PLINK
3.0 years ago by kk.mahsa ▴ 150
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0
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1.3k
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Comment: Comment: Error:Could not open individual file
3.0 years ago by kk.mahsa ▴ 150
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1
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1.3k
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Comment: Comment: Error:Could not open individual file
3.0 years ago by kk.mahsa ▴ 150
0
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4
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1.3k
views
Error:Could not open individual file
Fst VCF vcftools
3.0 years ago by kk.mahsa ▴ 150
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0
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1.2k
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Comment: Comment: Identify most and least abundant allele (nMAJ and nMIN) for pooled heterozygosit
3.0 years ago by kk.mahsa ▴ 150
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0
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1.5k
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Comment: Comment: Speeding up HaplotypeCaller analysis
3.2 years ago by kk.mahsa ▴ 150
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1
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1.5k
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Comment: Comment: Speeding up HaplotypeCaller analysis
3.2 years ago by kk.mahsa ▴ 150
1
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5
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1.5k
views
Speeding up HaplotypeCaller analysis
Linux CPU HaplotypeCaller
updated 3.2 years ago by 164k • written 3.2 years ago by ▴ 150
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2
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2.3k
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Comment: Comment: Use of GenotypeGVCFs in population genetic studies
3.2 years ago by kk.mahsa ▴ 150
1
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6
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2.3k
views
Use of GenotypeGVCFs in population genetic studies
WGS Introgression GenotypeGVCFs ADMIXTURE GATK
updated 3.2 years ago by ★ 1.2k • written 3.2 years ago by ▴ 150
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1
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948
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Comment: C: Annotation of probes using annotated genome
3.9 years ago by kk.mahsa ▴ 150
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3
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948
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Annotation of probes using annotated genome
microarray probes affymetrix annotation blastn
3.9 years ago by kk.mahsa ▴ 150
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0
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1.0k
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Comment: C: Official software repository
4.9 years ago by kk.mahsa ▴ 150
6
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3
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1.0k
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Official software repository
SNP software repository
4.9 years ago by kk.mahsa ▴ 150
0
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0
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702
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A practical workflow for microarray gene expression Meta analysis
Meta analysis Microarray Gene expression
4.9 years ago by kk.mahsa ▴ 150
0
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2
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17k
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Comment: C: converting fna format to fasta
updated 5.4 years ago by 44k • written 7.4 years ago by ▴ 150
2
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3
replies
1.9k
views
visualization of identified SSRs
SSR visualize
updated 5.6 years ago by 20 • written 7.0 years ago by ▴ 150
0
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1
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2.7k
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diffrence between number of reads in fastqc reports and collectalignmentsummarymetrics of Picard
Picard FastQC BAM READs
5.9 years ago by kk.mahsa ▴ 150
0
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1
reply
1.3k
views
how to find mammalian-wide interspersed repeats (MIRs) for different mammalian
MIRs Repetetive elements
updated 6.5 years ago by 20 • written 7.1 years ago by ▴ 150
0
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0
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1.3k
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Comment: C: how to get common variants between two species?
6.8 years ago by kk.mahsa ▴ 150
1
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2
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1.3k
views
how to get common variants between two species?
SNP next-gen common variant
updated 6.8 years ago by ★ 1.5k • written 6.8 years ago by ▴ 150
4
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2
replies
2.2k
views
CNV detection using beakdancer and SVDetect
SVDetect breakdancer CNV
updated 6.9 years ago by ★ 2.9k • written 6.9 years ago by ▴ 150
0
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1
reply
3.9k
views
bgzf_read error during samtools run
software error samtools cnv-seq bgzf
updated 6.9 years ago by 104k • written 6.9 years ago by ▴ 150
2
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2
replies
3.5k
views
SRA submission problem
SRA Aspera connect NCBI
7.0 years ago by kk.mahsa ▴ 150
5
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1
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2.8k
views
how can i inter into my root directory in SRA (NCBI) and create subdirectory?
SRA NCBI
updated 7.0 years ago by 44k • written 7.0 years ago by ▴ 150
4
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0
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2.8k
views
Comment: C: how can i inter into my root directory in SRA (NCBI) and create subdirectory?
updated 7.0 years ago by 44k • written 7.0 years ago by ▴ 150
0
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0
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4.4k
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Comment: C: combine two fastq file (paired end) to submit in NCBI
7.0 years ago by kk.mahsa ▴ 150
0
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1
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4.4k
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Comment: C: combine two fastq file (paired end) to submit in NCBI
7.0 years ago by kk.mahsa ▴ 150
0
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1
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1.5k
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Comment: A: dividing fastq file into 2 separate files
7.0 years ago by kk.mahsa ▴ 150
0
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0
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4.4k
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Comment: C: combine two fastq file (paired end) to submit in NCBI
7.0 years ago by kk.mahsa ▴ 150
0
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1
reply
4.4k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
updated 7.0 years ago by 147k • written 7.0 years ago by ▴ 150
4
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7
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4.4k
views
combine two fastq file (paired end) to submit in NCBI
SRA fastq
updated 7.0 years ago by 147k • written 7.0 years ago by ▴ 150
0
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0
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5.2k
views
Comment: C: Convert repeat masked out file to bed file format
7.2 years ago by kk.mahsa ▴ 150
0
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0
replies
3.0k
views
Comment: C: how to combine two output of RepeatMasker?
7.3 years ago by kk.mahsa ▴ 150
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