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1
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1.6k
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Pathway Analysis with after sleuth
rna-seq
6.7 years ago by
Ric
▴ 430
1
vote
3
replies
1.3k
views
transcript annotation software
RNA-Seq
annotation
updated 6.8 years ago by
GouthamAtla
12k • written 6.8 years ago by
Ric
▴ 430
0
votes
0
replies
1.4k
views
PBjelly, PBhoney and SSPACE-LongRead correct order
pacbio
Assembly
SSPACE-LongRead
PBjelly
PBhoney
7.1 years ago by
Ric
▴ 430
2
votes
2
replies
2.9k
views
Removing contaminations from PacBio reads
pacbio
sequencing
Assembly
fastq
7.1 years ago by
Ric
▴ 430
1
vote
6
replies
4.2k
views
Gc Content In Mate Pairs / Pair-End
biopython
paired
gc
updated 7.2 years ago by
Biostar
20 • written 12.2 years ago by
Ric
▴ 430
0
votes
6
replies
2.7k
views
Assembly out of mapping reads to a reference genome
Assembly
7.6 years ago by
Ric
▴ 430
1
vote
5
replies
2.7k
views
blast results combining with genome annotation
blast
gene
7.6 years ago by
Ric
▴ 430
3
votes
2
replies
978
views
swiss-prot size reduction
blast
updated 7.6 years ago by
Jean-Karim Heriche
27k • written 7.6 years ago by
Ric
▴ 430
0
votes
1
reply
2.6k
views
How to find Bloom filter parameter for Abyss 2
Assembly
genome
bloom filter
7.7 years ago by
Ric
▴ 430
0
votes
0
replies
1.2k
views
Blat: Assertion 'offset <= inSeq->size' failed
alignment
blat
7.7 years ago by
Ric
▴ 430
0
votes
3
replies
1.4k
views
RNAseq assembly for diploid genome.
RNA-Seq
Assembly
updated 7.7 years ago by
Whoknows
▴ 960 • written 7.7 years ago by
Ric
▴ 430
3
votes
2
replies
3.8k
views
estimate genome coverage
masurca
kmergenie
Assembly
updated 7.7 years ago by
dbrowne.up
▴ 80 • written 7.7 years ago by
Ric
▴ 430
0
votes
12
replies
2.6k
views
Estimate stdev and mean in paired-end
masurca
Assembly
paired-end
sequencing
updated 7.7 years ago by
i.sudbery
19k • written 7.7 years ago by
Ric
▴ 430
0
votes
0
replies
1.2k
views
Setting parameters for MaSuRCa
Assembly
masurca
7.7 years ago by
Ric
▴ 430
1
vote
4
replies
4.6k
views
Duplicates removal tool for paired-end
fastq
sequence
ngs
updated 7.8 years ago by
i.sudbery
19k • written 7.8 years ago by
Ric
▴ 430
1
vote
1
reply
2.4k
views
removing chloroplast sequence from FASTQ files
fastq
Assembly
7.8 years ago by
Ric
▴ 430
3
votes
2
replies
3.2k
views
Difference between SSPACE and AlignGraph
Assembly
SSPACE
AlignGraph
updated 7.9 years ago by
Chris Fields
★ 2.2k • written 7.9 years ago by
Ric
▴ 430
2
votes
2
replies
15k
views
How to calculate the insert size for Paired-end reads
SSPACE
insert-size
7.9 years ago by
Ric
▴ 430
3
votes
10
replies
6.4k
views
Minimum length of reads after trimming for Assembly
Assembly
sequencing
qc
fastqc
Trimmomatic
7.9 years ago by
Ric
▴ 430
0
votes
6
replies
4.7k
views
Paired-end reads: Sequence length is different between forward and reverse read
next-gen
sequencing
sequence
7.9 years ago by
Ric
▴ 430
7
votes
5
replies
7.2k
views
Reference guided assembly methods
Assembly
updated 7.9 years ago by
Sej Modha
5.3k • written 7.9 years ago by
Ric
▴ 430
2
votes
1
reply
2.9k
views
How to choose the right RG,SM and LB values for alignment
next-gen
alignment
updated 8.2 years ago by
Devon Ryan
104k • written 8.2 years ago by
Ric
▴ 430
0
votes
0
replies
1.6k
views
Ruffus - No jobs were run because no file names matched.
python
ruffus
8.3 years ago by
Ric
▴ 430
0
votes
1
reply
6.3k
views
SNP and gene density along the chromosomes plots
gene-density
ggplot2
R
SNP
updated 24 months ago by
Ram
43k • written 8.6 years ago by
Ric
▴ 430
3
votes
1
reply
2.2k
views
probability of mapping a random string of four nucleotides in a genome
mapping
probability
ngs
dna
updated 2.4 years ago by
Ram
43k • written 8.7 years ago by
Ric
▴ 430
0
votes
1
reply
1.2k
views
Galaxy password forgot
galaxy
updated 17 months ago by
Ram
43k • written 8.8 years ago by
Ric
▴ 430
2
votes
2
replies
5.4k
views
How to find out codon changes in non-synonymous and synonymous SNPs
snpeff
snpsift
SNP
effect
updated 10.0 years ago by
DG
7.3k • written 10.0 years ago by
Ric
▴ 430
2
votes
7
replies
8.7k
views
Ignore Reads In Bwa
bwa
paired
galaxy
samtools
updated 10.3 years ago by
Biostar
20 • written 12.2 years ago by
Ric
▴ 430
21
votes
6
replies
7.3k
views
Fastqc And Require Tools
fastqc
illumina
next-gen
sequencing
sequence
quality
updated 10.5 years ago by
Phil S.
▴ 700 • written 12.3 years ago by
Ric
▴ 430
129 results • Page
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