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Comment: C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
updated 5.7 years ago by 45k • written 11.2 years ago by ▴ 660
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2.7k
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Answer: A: Establishing a metagenomics lab/hardware requirements
5.9 years ago by Rahul Sharma ▴ 660
32
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23
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27k
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14 follow
How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
bowtie2 mapping
updated 2.8 years ago by ★ 1.3k • written 11.2 years ago by ▴ 660
4
votes
6
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1.4k
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Are there institutions/companies which provide paid access to computational resources?
RAM Whole genome assemblies Whole Exome Sequening
6.1 years ago by Rahul Sharma ▴ 660
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1.4k
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Answer: A: Are there institutions/companies which provide paid access to computational reso
6.1 years ago by Rahul Sharma ▴ 660
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0
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1.1k
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Tools to access variation of ploidy at certain genomic loci using WES
WES Ploidy Endomitosis
6.2 years ago by Rahul Sharma ▴ 660
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1
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2.1k
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Job: Bioinformatician - Genome Biologics - Accelerating Drug Development
Machine-learning R RNA-seq next-gen python
updated 2.1 years ago by 45k • written 6.2 years ago by ▴ 660
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2
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2.2k
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Ribo-seq couts are more than RNA-seq count
rna-seq Ribo-SEq Xtail NGS data analysis
updated 6.8 years ago by ▴ 20 • written 7.2 years ago by ▴ 660
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0
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2.8k
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Comment: C: 25 DE genes with 8 samples and 4 DE genes with 16 samples
6.8 years ago by Rahul Sharma ▴ 660
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1
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9.4k
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Answer: A: Formula to calculate FPKM
7.3 years ago by Rahul Sharma ▴ 660
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2.0k
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Answer: A: gene expression database for quary a gene
7.3 years ago by Rahul Sharma ▴ 660
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1
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3.0k
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Answer: A: gene ortholog conversion
7.3 years ago by Rahul Sharma ▴ 660
2
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1
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6.6k
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Answer: A: Tophat2 shows error during running
updated 7.5 years ago by 45k • written 7.5 years ago by ▴ 660
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0
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1.4k
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DeSEq2 unexpressed genes and unchnaged gene expression
RNA-Seq DeSeq2 Gene expression
7.6 years ago by Rahul Sharma ▴ 660
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0
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4.8k
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Answer: A: Is there any tool to calculate dn/ds for orthologues?
7.8 years ago by Rahul Sharma ▴ 660
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1
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11k
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Answer: A: Convert Gff3 (Augustus Output File) To Feature Table File (.Tbl) - Genbank Submi
8.0 years ago by Rahul Sharma ▴ 660
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1
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3.1k
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Answer: A: Calculate numbers of indels <=2 nt within sam
8.0 years ago by Rahul Sharma ▴ 660
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0
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3.2k
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Answer: A: extract SNP, variants
8.2 years ago by Rahul Sharma ▴ 660
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0
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2.4k
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Comment: C: MSA processing algorithms in perl
8.6 years ago by Rahul Sharma ▴ 660
1
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2
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2.4k
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MSA processing algorithms in perl
perl MSA algorithms
8.6 years ago by Rahul Sharma ▴ 660
0
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0
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2.9k
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Bambus2 .Mate File
scaffolding
updated 9.4 years ago by 20 • written 13.3 years ago by ▴ 660
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3
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4.0k
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How Does Trinity Deal With Polya Tails On Sequencing Reads? Is It Better To Trim Them Of Before Assembly?
trinity
updated 9.4 years ago by 20 • written 11.5 years ago by ▴ 660
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1
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3.3k
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MIRA for metagenome assembly
Metagenome next-gen MIRA
updated 2.8 years ago by 45k • written 9.7 years ago by ▴ 660
9
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5
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15k
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How To Extract Cds And Protein Sequences From Cufflinks Transcripts.Gtf File?
cufflinks rna-seq cds
updated 10.1 years ago by ▴ 60 • written 11.5 years ago by ▴ 660
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1
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17k
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Comment: C: Get Query Coverage From Local Blast
11.0 years ago by Rahul Sharma ▴ 660
0
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3
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4.1k
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Difference In Cufflinks Transcripts With Merging 3 Cufflink Outputs And By Pooling All 3 Libraries?
cufflinks rna-seq tophat2
updated 11.0 years ago by 20 • written 11.5 years ago by ▴ 660
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27k
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Comment: C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
11.2 years ago by Rahul Sharma ▴ 660
3
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0
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4.6k
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Answer: A: Perl Script To Retrieve All Orf?
11.2 years ago by Rahul Sharma ▴ 660
12
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7
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5.4k
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Smaller Assembled Genome Size Than Expected
illumina velvet assembly next-gen sequencing repeats
updated 11.4 years ago by ★ 2.7k • written 13.4 years ago by ▴ 660
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1
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4.0k
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Comment: C: How Does Trinity Deal With Polya Tails On Sequencing Reads? Is It Better To Trim
11.5 years ago by Rahul Sharma ▴ 660
0
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1
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4.1k
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Comment: C: Difference In Cufflinks Transcripts With Merging 3 Cufflink Outputs And By Pooli
11.5 years ago by Rahul Sharma ▴ 660
0
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0
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7.1k
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Answer: A: To Calculate The Exact Total Number Of Mapped Reads In Exome Regions
11.5 years ago by Rahul Sharma ▴ 660
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0
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3.0k
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Comment: C: Tophat2 Error With Repeat-Masked Genome!!
11.6 years ago by Rahul Sharma ▴ 660
1
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2
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3.0k
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Tophat2 Error With Repeat-Masked Genome!!
tophat2 bowtie2
11.6 years ago by Rahul Sharma ▴ 660
0
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0
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9.6k
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Comment: C: Edgeredef Failed When Running Repeatmodeler
11.6 years ago by Rahul Sharma ▴ 660
3
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2
replies
3.0k
views
Parallelizing Read Trimming/Filtering And Genome Assembly!!
parallel trimming assembly
updated 11.6 years ago by 166k • written 11.6 years ago by ▴ 660
0
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0
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10k
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Comment: C: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Sam
11.6 years ago by Rahul Sharma ▴ 660
9
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19
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10k
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Forum: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Same Input Parameters With Openmp Enabled.
velvet genome
updated 2.3 years ago by 45k • written 11.6 years ago by ▴ 660
0
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0
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10k
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Comment: C: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Sam
11.6 years ago by Rahul Sharma ▴ 660
1
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1
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10k
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Answer: A: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Sam
11.6 years ago by Rahul Sharma ▴ 660
0
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0
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10k
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Comment: C: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Sam
11.6 years ago by Rahul Sharma ▴ 660
0
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1
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10k
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Comment: C: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Sam
11.6 years ago by Rahul Sharma ▴ 660
3
votes
2
replies
3.6k
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Does Velvet Assembler Use Ram Of All Nodes Altogether?
genome velvet assembly
updated 11.7 years ago by ★ 2.2k • written 11.7 years ago by ▴ 660
2
votes
2
replies
6.9k
views
What Happens When The K-Mer Size Is Larger Than The Trimmed Reads Size In Velvet Assembly?
velvet
updated 11.7 years ago by 8.6k • written 12.2 years ago by ▴ 660
1
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1
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3.1k
views
Genome Assembly From Large Insert Libraries
velvet scaffolding illumina
updated 11.8 years ago by ★ 1.7k • written 11.8 years ago by ▴ 660
2
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1
reply
5.4k
views
Answer: A: Question About Input Tree In Paml Codeml
12.2 years ago by Rahul Sharma ▴ 660
1
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1
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14k
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Answer: A: Amd Or Intel Based Workstation For Bioinformatics?
12.3 years ago by Rahul Sharma ▴ 660
2
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1
reply
4.1k
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Answer: A: Varying Lengths In 2X150 Miseq Sequencing Data
12.3 years ago by Rahul Sharma ▴ 660
3
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1
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15k
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Answer: Answer: Take A Subset Of A Fastq Paired-End Sample
updated 2.1 years ago by 45k • written 12.3 years ago by ▴ 660
0
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0
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9.7k
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Answer: A: Circos-How To Generate Circos Image Of Snp And Indel Across Chromosomes
12.3 years ago by Rahul Sharma ▴ 660
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