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Comment: C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
updated 2.3 years ago by 35k • written 7.8 years ago by ▴ 620
1
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1
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982
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Answer: A: Establishing a metagenomics lab/hardware requirements
2.5 years ago by Rahul Sharma ▴ 620
27
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20
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18k
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11 follow
How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
bowtie2 mapping
updated 2.6 years ago by • 0 • written 7.8 years ago by ▴ 620
4
votes
6
replies
567
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Are there institutions/companies which provide paid access to computational resources?
RAM Whole genome assemblies Whole Exome Sequening
2.7 years ago by Rahul Sharma ▴ 620
2
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0
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567
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Answer: A: Are there institutions/companies which provide paid access to computational reso
2.7 years ago by Rahul Sharma ▴ 620
0
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0
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516
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Tools to access variation of ploidy at certain genomic loci using WES
WES Ploidy Endomitosis
2.7 years ago by Rahul Sharma ▴ 620
0
votes
1
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902
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Job: Bioinformatician - Genome Biologics - Accelerating Drug Development
next-gen rna-seq R python Machine learning Job
2.8 years ago by Rahul Sharma ▴ 620
1
vote
2
replies
1.3k
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Ribo-seq couts are more than RNA-seq count
rna-seq Ribo-SEq Xtail NGS data analysis
updated 3.3 years ago by ▴ 20 • written 3.8 years ago by ▴ 620
1
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0
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1.4k
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Comment: C: 25 DE genes with 8 samples and 4 DE genes with 16 samples
3.3 years ago by Rahul Sharma ▴ 620
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1
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7.1k
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Answer: A: Formula to calculate FPKM
3.9 years ago by Rahul Sharma ▴ 620
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0
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950
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Answer: A: gene expression database for quary a gene
3.9 years ago by Rahul Sharma ▴ 620
1
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1
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1.4k
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Answer: A: gene ortholog conversion
3.9 years ago by Rahul Sharma ▴ 620
1
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1
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4.3k
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Answer: A: Tophat2 shows error during running
updated 4.1 years ago by 35k • written 4.1 years ago by ▴ 620
0
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0
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982
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DeSEq2 unexpressed genes and unchnaged gene expression
RNA-Seq DeSeq2 Gene expression
4.2 years ago by Rahul Sharma ▴ 620
0
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0
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2.6k
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Answer: A: Is there any tool to calculate dn/ds for orthologues?
4.4 years ago by Rahul Sharma ▴ 620
1
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1
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8.6k
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Answer: A: Convert Gff3 (Augustus Output File) To Feature Table File (.Tbl) - Genbank Submi
4.6 years ago by Rahul Sharma ▴ 620
0
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1
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1.5k
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Answer: A: Calculate numbers of indels <=2 nt within sam
4.6 years ago by Rahul Sharma ▴ 620
0
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0
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1.9k
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Answer: A: extract SNP, variants
4.8 years ago by Rahul Sharma ▴ 620
0
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0
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1.5k
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Comment: C: MSA processing algorithms in perl
5.1 years ago by Rahul Sharma ▴ 620
1
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2
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1.5k
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MSA processing algorithms in perl
perl MSA algorithms
5.1 years ago by Rahul Sharma ▴ 620
0
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0
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2.4k
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Bambus2 .Mate File
scaffolding
updated 6.0 years ago by 20 • written 9.9 years ago by ▴ 620
1
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3
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3.2k
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How Does Trinity Deal With Polya Tails On Sequencing Reads? Is It Better To Trim Them Of Before Assembly?
trinity
updated 6.0 years ago by 20 • written 8.1 years ago by ▴ 620
0
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1
reply
2.5k
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MIRA for metagenome assembly
next-gen Metagenome MIRA
6.3 years ago by Rahul Sharma ▴ 620
7
votes
5
replies
12k
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How To Extract Cds And Protein Sequences From Cufflinks Transcripts.Gtf File?
cufflinks rna-seq cds
updated 6.7 years ago by ▴ 60 • written 8.1 years ago by ▴ 620
1
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1
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13k
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Comment: C: Get Query Coverage From Local Blast
7.6 years ago by Rahul Sharma ▴ 620
0
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3
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3.4k
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Difference In Cufflinks Transcripts With Merging 3 Cufflink Outputs And By Pooling All 3 Libraries?
cufflinks rna-seq tophat2
updated 7.6 years ago by 20 • written 8.1 years ago by ▴ 620
0
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0
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18k
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Comment: C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
7.8 years ago by Rahul Sharma ▴ 620
3
votes
0
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3.6k
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Answer: A: Perl Script To Retrieve All Orf?
7.8 years ago by Rahul Sharma ▴ 620
12
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7
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3.6k
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Smaller Assembled Genome Size Than Expected
illumina velvet assembly next-gen sequencing repeats
updated 8.0 years ago by ★ 2.5k • written 10.0 years ago by ▴ 620
0
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1
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3.2k
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Comment: C: How Does Trinity Deal With Polya Tails On Sequencing Reads? Is It Better To Trim
8.1 years ago by Rahul Sharma ▴ 620
0
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1
reply
3.4k
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Comment: C: Difference In Cufflinks Transcripts With Merging 3 Cufflink Outputs And By Pooli
8.1 years ago by Rahul Sharma ▴ 620
0
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0
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5.6k
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Answer: A: To Calculate The Exact Total Number Of Mapped Reads In Exome Regions
8.1 years ago by Rahul Sharma ▴ 620
0
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0
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2.3k
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Comment: C: Tophat2 Error With Repeat-Masked Genome!!
8.1 years ago by Rahul Sharma ▴ 620
1
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2
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2.3k
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Tophat2 Error With Repeat-Masked Genome!!
tophat2 bowtie2
8.2 years ago by Rahul Sharma ▴ 620
0
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0
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5.5k
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Comment: C: Edgeredef Failed When Running Repeatmodeler
8.2 years ago by Rahul Sharma ▴ 620
3
votes
2
replies
2.4k
views
Parallelizing Read Trimming/Filtering And Genome Assembly!!
parallel trimming assembly
updated 8.2 years ago by 141k • written 8.2 years ago by ▴ 620
0
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0
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7.3k
views
Comment: C: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Sam
8.2 years ago by Rahul Sharma ▴ 620
9
votes
19
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7.3k
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Forum: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Same Input Parameters With Openmp Enabled.
velvet genome Forum
updated 5 weeks ago by 35k • written 8.2 years ago by ▴ 620
0
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0
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7.3k
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Comment: C: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Sam
8.2 years ago by Rahul Sharma ▴ 620
1
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1
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7.3k
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Answer: A: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Sam
8.2 years ago by Rahul Sharma ▴ 620
0
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0
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7.3k
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Comment: C: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Sam
8.2 years ago by Rahul Sharma ▴ 620
0
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1
reply
7.3k
views
Comment: C: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Sam
8.2 years ago by Rahul Sharma ▴ 620
3
votes
2
replies
2.9k
views
Does Velvet Assembler Use Ram Of All Nodes Altogether?
genome velvet assembly
updated 8.3 years ago by ★ 2.2k • written 8.3 years ago by ▴ 620
2
votes
2
replies
5.7k
views
What Happens When The K-Mer Size Is Larger Than The Trimmed Reads Size In Velvet Assembly?
velvet
updated 8.3 years ago by 8.5k • written 8.8 years ago by ▴ 620
1
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1
reply
2.4k
views
Genome Assembly From Large Insert Libraries
velvet scaffolding illumina
updated 8.3 years ago by ★ 1.7k • written 8.3 years ago by ▴ 620
2
votes
1
reply
4.0k
views
Answer: A: Question About Input Tree In Paml Codeml
8.8 years ago by Rahul Sharma ▴ 620
1
vote
1
reply
9.5k
views
Answer: A: Amd Or Intel Based Workstation For Bioinformatics?
8.8 years ago by Rahul Sharma ▴ 620
2
votes
1
reply
3.0k
views
Answer: A: Varying Lengths In 2X150 Miseq Sequencing Data
8.8 years ago by Rahul Sharma ▴ 620
3
votes
1
reply
11k
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Answer: A: Take A Subset Of A Fastq Paired-End Sample
8.8 years ago by Rahul Sharma ▴ 620
0
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0
replies
7.6k
views
Answer: A: Circos-How To Generate Circos Image Of Snp And Indel Across Chromosomes
8.9 years ago by Rahul Sharma ▴ 620
82 results • Page 1 of 2
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