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287
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Downloading the raw microarray data from GEO
.gpr microarray .CEL
updated 14 days ago by 142k • written 14 days ago by ▴ 10
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3.8k
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Comment: Comment: Tutorial for analysing gpr files of microarray
6 weeks ago by bioyas ▴ 10
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0
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604
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Integration of scatac-seq data with another integrated scRNA and scATAC data set
Signac integration scATAC Seurat scRNA
15 months ago by bioyas ▴ 10
1
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1
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616
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separate read1 and read2 from merged fastq file and align against reference genome
fastq alignment regex headers
updated 18 months ago by 11k • written 18 months ago by ▴ 10
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0
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620
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Comment: Comment: different pileups between sorted.bam file and bigwig file
2.0 years ago by bioyas ▴ 10
0
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1
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1.9k
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Comment: Comment: Loading possorted_genome_bam.bam generated by 10X cellranger count command into
2.0 years ago by bioyas ▴ 10
0
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2
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620
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different pileups between sorted.bam file and bigwig file
bigwig deeptools IGV
updated 10 months ago by 43k • written 2.0 years ago by ▴ 10
0
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1
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1.9k
views
Comment: Comment: Loading possorted_genome_bam.bam generated by 10X cellranger count command into
2.0 years ago by bioyas ▴ 10
3
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5
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1.9k
views
Loading possorted_genome_bam.bam generated by 10X cellranger count command into IGV.
cellranger deeptools bigwig IGV single-cell
updated 10 months ago by 43k • written 2.0 years ago by ▴ 10
1
vote
2
replies
1.9k
views
quantify counts from sorted bam files using a bed file containing regions of interest
counts featureCount bam Bed
updated 2.2 years ago by ★ 1.5k • written 2.2 years ago by ▴ 10
0
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1
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8.8k
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Comment: Comment: filter out fasta File by pattern
2.2 years ago by bioyas ▴ 10
3
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4
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1.4k
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Convert per base bedgraph to Bed format
Bedgraph perbase Bed Bedtools
updated 3.1 years ago by 35k • written 3.1 years ago by ▴ 10
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0
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1.7k
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Comment: C: How to Identify Housekeeping genes from gene expression matrix and normalize the
3.6 years ago by bioyas ▴ 10
0
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1
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1.7k
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Comment: C: How to Identify Housekeeping genes from gene expression matrix and normalize the
3.6 years ago by bioyas ▴ 10
0
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1
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1.7k
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Comment: C: How to Identify Housekeeping genes from gene expression matrix and normalize the
3.6 years ago by bioyas ▴ 10
1
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6
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1.7k
views
How to Identify Housekeeping genes from gene expression matrix and normalize the data
housekeeping genes normalization R edger limma
3.6 years ago by bioyas ▴ 10
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0
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1.3k
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Comment: C: Differential Expression analysis between single cell RNa seq & bulk RNa seq data
3.8 years ago by bioyas ▴ 10
1
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3
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1.3k
views
Differential Expression analysis between single cell RNa seq & bulk RNa seq data
rna-seq Bulk rna seq DE analysis SC-RNA-sq
updated 3.8 years ago by 14k • written 3.8 years ago by ▴ 10
0
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1
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34k
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Comment: C: Can the code of a R package be changed? How?
4.0 years ago by bioyas ▴ 10
5
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5
replies
3.6k
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DEG analysis between 2 samples using edger
edger RNA-Seq biological_replicates
updated 4.0 years ago by ★ 7.1k • written 4.0 years ago by ▴ 10
0
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1
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3.6k
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Comment: C: DEG analysis between 2 samples using edger
4.0 years ago by bioyas ▴ 10
0
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0
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1.5k
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Comment: C: getting 0 counts using hisat2 and feature_count pipeline
4.3 years ago by bioyas ▴ 10
0
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1
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1.5k
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Comment: C: getting 0 counts using hisat2 and feature_count pipeline
4.3 years ago by bioyas ▴ 10
3
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4
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1.5k
views
getting 0 counts using hisat2 and feature_count pipeline
RNA-Seq Hisat2 featurecounts count
updated 4.3 years ago by 14k • written 4.3 years ago by ▴ 10
3
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4
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5.6k
views
How to get the gene expression matrix from GEO while getGEO returns 0 features?
GETquery ATAC-seq GEO getGEO RNA-Seq
updated 11 months ago by 43k • written 4.8 years ago by ▴ 10
0
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1
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5.6k
views
Comment: C: How to get the gene expression matrix from GEO while getGEO returns 0 features?
4.8 years ago by bioyas ▴ 10
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