Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
774
views
How to use lme4() to perform differential expression on bulk RNA seq data with multiple random effects?
bulkRNAseq lme4
updated 8 months ago by 88k • written 8 months ago by ▴ 20
0
votes
1
reply
554
views
Downloading the raw microarray data from GEO
.gpr microarray .CEL
updated 14 months ago by 151k • written 14 months ago by ▴ 20
0
votes
0
replies
4.6k
views
Comment: Comment: Tutorial for analysing gpr files of microarray
15 months ago by bioyas ▴ 20
0
votes
0
replies
877
views
Integration of scatac-seq data with another integrated scRNA and scATAC data set
Signac integration scATAC Seurat scRNA
2.4 years ago by bioyas ▴ 20
1
vote
1
reply
917
views
separate read1 and read2 from merged fastq file and align against reference genome
fastq alignment regex headers
updated 2.6 years ago by 11k • written 2.7 years ago by ▴ 20
0
votes
0
replies
857
views
Comment: Comment: different pileups between sorted.bam file and bigwig file
3.1 years ago by bioyas ▴ 20
0
votes
1
reply
3.0k
views
Comment: Comment: Loading possorted_genome_bam.bam generated by 10X cellranger count command into
3.1 years ago by bioyas ▴ 20
0
votes
2
replies
857
views
different pileups between sorted.bam file and bigwig file
bigwig deeptools IGV
updated 2.0 years ago by 45k • written 3.1 years ago by ▴ 20
0
votes
1
reply
3.0k
views
Comment: Comment: Loading possorted_genome_bam.bam generated by 10X cellranger count command into
3.1 years ago by bioyas ▴ 20
3
votes
5
replies
3.0k
views
Loading possorted_genome_bam.bam generated by 10X cellranger count command into IGV.
cellranger deeptools bigwig IGV single-cell
updated 2.0 years ago by 45k • written 3.1 years ago by ▴ 20
1
vote
2
replies
3.7k
views
quantify counts from sorted bam files using a bed file containing regions of interest
counts featureCount bam Bed
updated 3.3 years ago by ★ 1.5k • written 3.3 years ago by ▴ 20
0
votes
1
reply
9.9k
views
Comment: Comment: filter out fasta File by pattern
3.3 years ago by bioyas ▴ 20
3
votes
4
replies
1.8k
views
Convert per base bedgraph to Bed format
Bedgraph perbase Bed Bedtools
updated 4.2 years ago by 36k • written 4.2 years ago by ▴ 20
0
votes
0
replies
2.3k
views
Comment: C: How to Identify Housekeeping genes from gene expression matrix and normalize the
4.8 years ago by bioyas ▴ 20
0
votes
1
reply
2.3k
views
Comment: C: How to Identify Housekeeping genes from gene expression matrix and normalize the
4.8 years ago by bioyas ▴ 20
0
votes
1
reply
2.3k
views
Comment: C: How to Identify Housekeeping genes from gene expression matrix and normalize the
4.8 years ago by bioyas ▴ 20
1
vote
6
replies
2.3k
views
How to Identify Housekeeping genes from gene expression matrix and normalize the data
housekeeping genes normalization R edger limma
4.8 years ago by bioyas ▴ 20
0
votes
0
replies
1.7k
views
Comment: C: Differential Expression analysis between single cell RNa seq & bulk RNa seq data
4.9 years ago by bioyas ▴ 20
1
vote
3
replies
1.7k
views
Differential Expression analysis between single cell RNa seq & bulk RNa seq data
rna-seq Bulk rna seq DE analysis SC-RNA-sq
updated 4.9 years ago by 15k • written 4.9 years ago by ▴ 20
0
votes
1
reply
35k
views
Comment: C: Can the code of a R package be changed? How?
5.1 years ago by bioyas ▴ 20
5
votes
5
replies
4.7k
views
DEG analysis between 2 samples using edger
edger RNA-Seq biological_replicates
updated 5.1 years ago by ★ 8.1k • written 5.1 years ago by ▴ 20
0
votes
1
reply
4.7k
views
Comment: C: DEG analysis between 2 samples using edger
5.1 years ago by bioyas ▴ 20
0
votes
0
replies
1.8k
views
Comment: C: getting 0 counts using hisat2 and feature_count pipeline
5.4 years ago by bioyas ▴ 20
0
votes
1
reply
1.8k
views
Comment: C: getting 0 counts using hisat2 and feature_count pipeline
5.4 years ago by bioyas ▴ 20
3
votes
4
replies
1.8k
views
getting 0 counts using hisat2 and feature_count pipeline
RNA-Seq Hisat2 featurecounts count
updated 5.4 years ago by 15k • written 5.4 years ago by ▴ 20
3
votes
4
replies
7.9k
views
How to get the gene expression matrix from GEO while getGEO returns 0 features?
GETquery ATAC-seq GEO getGEO RNA-Seq
updated 2.0 years ago by 45k • written 6.0 years ago by ▴ 20
0
votes
1
reply
7.9k
views
Comment: C: How to get the gene expression matrix from GEO while getGEO returns 0 features?
6.0 years ago by bioyas ▴ 20
27 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6