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0
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2
replies
308
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How to convert Mummer coords output to a Bed file?
nucmer mummer bed
updated 3 months ago by 43k • written 3 months ago by ▴ 290
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0
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873
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Comment: Comment: Why FindMarkers between conditions shows pct.1 and pct.2 as 1 for most of the ge
11 months ago by Biologist ▴ 290
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2
replies
873
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Why FindMarkers between conditions shows pct.1 and pct.2 as 1 for most of the genes?
seurat FindMarkers scRNA-seq
updated 11 months ago by 43k • written 11 months ago by ▴ 290
3
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3
replies
848
views
gtf2bed doesn't give gene_id in the bed file
rnaseq gtf bed
updated 21 months ago by ▴ 700 • written 21 months ago by ▴ 290
0
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0
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848
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Comment: Comment: gtf2bed doesn't give gene_id in the bed file
21 months ago by Biologist ▴ 290
0
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1
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5.3k
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Comment: Comment: Gene length table from gtf file for rpkm() function
21 months ago by Biologist ▴ 290
0
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1
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1.8k
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Comment: C: How to extract required lines of particular chromosome from a gtf file?
3.5 years ago by Biologist ▴ 290
1
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3
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1.8k
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How to extract required lines of particular chromosome from a gtf file?
RNA-Seq gtf linux command
updated 3.5 years ago by 43k • written 3.5 years ago by ▴ 290
0
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6
replies
4.7k
views
Error with snakemake
snakemake python pipeline salmon
updated 3.8 years ago by 20 • written 5.9 years ago by ▴ 290
0
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1
reply
712
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Problem with edgesfile into cytoscape for network plot
RNA-Seq wgcna r cytoscape
updated 3.9 years ago by 3.6k • written 3.9 years ago by ▴ 290
0
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0
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1.8k
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Comment: C: Problem with differential analysis between two groups having low raw counts
4.1 years ago by Biologist ▴ 290
2
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14
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1.8k
views
Problem with differential analysis between two groups having low raw counts
RNA-Seq edger differential analysis expression
updated 4.1 years ago by 82k • written 4.1 years ago by ▴ 290
0
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0
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1.8k
views
Comment: C: Problem with differential analysis between two groups having low raw counts
4.1 years ago by Biologist ▴ 290
0
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1
reply
1.8k
views
Comment: C: Problem with differential analysis between two groups having low raw counts
4.1 years ago by Biologist ▴ 290
0
votes
1
reply
1.8k
views
Comment: C: Problem with differential analysis between two groups having low raw counts
4.1 years ago by Biologist ▴ 290
0
votes
1
reply
1.8k
views
Comment: C: Problem with differential analysis between two groups having low raw counts
4.1 years ago by Biologist ▴ 290
0
votes
1
reply
1.8k
views
Comment: C: Problem with differential analysis between two groups having low raw counts
4.1 years ago by Biologist ▴ 290
0
votes
1
reply
1.8k
views
Comment: C: Problem with differential analysis between two groups having low raw counts
4.1 years ago by Biologist ▴ 290
0
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1
reply
3.9k
views
Comment: C: How to get different outputs for kallisto on multiple samples?
4.2 years ago by Biologist ▴ 290
0
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2
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3.9k
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Comment: C: How to get different outputs for kallisto on multiple samples?
4.2 years ago by Biologist ▴ 290
2
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6
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3.9k
views
How to get different outputs for kallisto on multiple samples?
kallisto RNA-Seq geneexpression slurm sbatch
updated 4.2 years ago by 14k • written 4.2 years ago by ▴ 290
0
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0
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4.3k
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Comment: C: WGCNA: Problem with selecting soft threshold
4.3 years ago by Biologist ▴ 290
0
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1
reply
4.3k
views
Comment: C: WGCNA: Problem with selecting soft threshold
4.3 years ago by Biologist ▴ 290
0
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1
reply
4.3k
views
Comment: C: WGCNA: Problem with selecting soft threshold
4.3 years ago by Biologist ▴ 290
0
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1
reply
4.3k
views
Comment: C: WGCNA: Problem with selecting soft threshold
4.3 years ago by Biologist ▴ 290
0
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1
reply
4.3k
views
Comment: C: WGCNA: Problem with selecting soft threshold
4.3 years ago by Biologist ▴ 290
1
vote
12
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4.3k
views
WGCNA: Problem with selecting soft threshold
RNA-Seq wgcna r network threshold
4.3 years ago by Biologist ▴ 290
4
votes
13
replies
5.3k
views
Stringtie with Gencode gtf file doesn't give any gene_ids or transcript_ids?
RNA-Seq stringtie lncRNA gtf gencode
updated 4.4 years ago by ▴ 10 • written 6.3 years ago by ▴ 290
0
votes
1
reply
993
views
Comment: C: Any R package to check the expression of single gene in multiple cancer types of
4.6 years ago by Biologist ▴ 290
1
vote
3
replies
993
views
Any R package to check the expression of single gene in multiple cancer types of TCGA?
RNA-Seq tcga r geneexpression
updated 4.6 years ago by 88k • written 4.6 years ago by ▴ 290
0
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1
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4.8k
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Comment: C: Classifying the samples based on zscore of a specific gene
4.6 years ago by Biologist ▴ 290
0
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1
reply
4.8k
views
Comment: C: Classifying the samples based on zscore of a specific gene
4.6 years ago by Biologist ▴ 290
0
votes
1
reply
4.8k
views
Comment: C: Classifying the samples based on zscore of a specific gene
4.6 years ago by Biologist ▴ 290
0
votes
1
reply
4.8k
views
Comment: C: Classifying the samples based on zscore of a specific gene
4.6 years ago by Biologist ▴ 290
1
vote
1
reply
4.8k
views
Comment: C: Classifying the samples based on zscore of a specific gene
4.6 years ago by Biologist ▴ 290
0
votes
1
reply
4.8k
views
Comment: C: Classifying the samples based on zscore of a specific gene
4.6 years ago by Biologist ▴ 290
0
votes
1
reply
4.8k
views
Comment: C: Classifying the samples based on zscore of a specific gene
4.6 years ago by Biologist ▴ 290
0
votes
1
reply
4.8k
views
Comment: C: Classifying the samples based on zscore of a specific gene
4.6 years ago by Biologist ▴ 290
0
votes
1
reply
4.8k
views
Comment: C: Classifying the samples based on zscore of a specific gene
4.6 years ago by Biologist ▴ 290
12
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22
replies
4.8k
views
Classifying the samples based on zscore of a specific gene
RNA-Seq R geneexpression zscore
4.6 years ago by Biologist ▴ 290
0
votes
1
reply
771
views
How to check the expression of a gene using the sequence of that gene?
RNA-Seq lncrna sequence blat ensembl
updated 4.9 years ago by ▴ 280 • written 4.9 years ago by ▴ 290
3
votes
5
replies
12k
views
How to convert featureCounts to FPKM?
RNA-Seq featurecounts fpkm r
updated 5.1 years ago by ▴ 230 • written 5.6 years ago by ▴ 290
0
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1
reply
4.2k
views
Comment: C: Why median is NA for some of the group outcomes in survival analysis?
5.1 years ago by Biologist ▴ 290
1
vote
3
replies
4.2k
views
Why median is NA for some of the group outcomes in survival analysis?
RNA-Seq survival kaplan-meier clinical r
updated 5.1 years ago by 27k • written 5.1 years ago by ▴ 290
3
votes
7
replies
6.9k
views
6 follow
How to make a plot with gProfileR results?
RNA-Seq gprofiler geneexpression pathways plot
updated 5.1 years ago by ▴ 30 • written 5.6 years ago by ▴ 290
0
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0
replies
3.0k
views
Comment: C: Error in differential analysis for samples with different time points
5.2 years ago by Biologist ▴ 290
0
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1
reply
3.0k
views
Comment: C: Error in differential analysis for samples with different time points
5.2 years ago by Biologist ▴ 290
3
votes
4
replies
3.0k
views
Error in differential analysis for samples with different time points
RNA-Seq r edger differential analysis
updated 5.2 years ago by 35k • written 5.2 years ago by ▴ 290
0
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0
replies
956
views
Comment: C: genie3 for lncRNAs and mRNAs co-expression
5.3 years ago by Biologist ▴ 290
0
votes
0
replies
4.6k
views
Comment: C: Estimating gene set enrichment using Fishers exact test
5.3 years ago by Biologist ▴ 290
194 results • Page 1 of 4
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