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2
votes
2
replies
1.2k
views
Tracing back files used in CLC Genomics?
clc
RNA-Seq
blast2go
blast
fisher
updated 5.2 years ago by
Biostar
20 • written 5.3 years ago by
jjrin
▴ 40
2
votes
2
replies
1.2k
views
CLC not outputting or showing table from Fisher's Exact Test
clc
RNA-Seq
blast2go
fisher's exact test
fisher
updated 5.3 years ago by
Jonathanjacobs
▴ 280 • written 5.3 years ago by
jjrin
▴ 40
1
vote
4
replies
10k
views
R ggplot Align Y-Axis on multiple graphs
ggarrange
ggplot2
r
updated 5.5 years ago by
Biostar
20 • written 7.0 years ago by
jjrin
▴ 40
1
vote
1
reply
3.2k
views
Gffread error: Error (GFaSeqGet): subsequence cannot be larger than...
RNA-Seq
gffread
StringTie
updated 6.4 years ago by
spriyar
▴ 10 • written 7.6 years ago by
jjrin
▴ 40
0
votes
1
reply
2.9k
views
Comment:
C: Prefiltering gene lists and DESeq
6.9 years ago by
jjrin
▴ 40
0
votes
3
replies
2.9k
views
Prefiltering gene lists and DESeq
RNA-Seq
deseq
r
updated 6.9 years ago by
h.mon
35k • written 6.9 years ago by
jjrin
▴ 40
0
votes
1
reply
10k
views
Comment:
C: R ggplot Align Y-Axis on multiple graphs
7.0 years ago by
jjrin
▴ 40
0
votes
1
reply
3.0k
views
Can't make sva comparison despite very distinct batch effects
sva
batch-effect
updated 10 months ago by
Ram
44k • written 7.0 years ago by
jjrin
▴ 40
1
vote
1
reply
2.9k
views
Plotting a PCA Plot from SVASeq results
pca
ruvseq
sva
svaseq
batch-effect
updated 10 months ago by
Ram
44k • written 7.0 years ago by
jjrin
▴ 40
1
vote
1
reply
3.1k
views
Using Mann-Whitney U Test to compare replicates
RNA-Seq
r
statistics
updated 7.3 years ago by
Jean-Karim Heriche
27k • written 7.3 years ago by
jjrin
▴ 40
1
vote
1
reply
2.5k
views
Salmon, Getting New TPM from new, updated NumReads
salmon
Numreads
alignment
7.3 years ago by
jjrin
▴ 40
0
votes
0
replies
2.2k
views
Comment:
C: Salmon never completes, stuck on processing fragments
7.4 years ago by
jjrin
▴ 40
0
votes
3
replies
2.2k
views
Salmon never completes, stuck on processing fragments
salmon
RNA-Seq
fastq
7.4 years ago by
jjrin
▴ 40
0
votes
0
replies
5.6k
views
Comment:
C: gffread error when extracting transcript sequences from gtf, coordinates exceed
7.6 years ago by
jjrin
▴ 40
0
votes
1
reply
5.6k
views
Comment:
C: gffread error when extracting transcript sequences from gtf, coordinates exceed
7.6 years ago by
jjrin
▴ 40
0
votes
1
reply
5.6k
views
Comment:
C: gffread error when extracting transcript sequences from gtf, coordinates exceed
7.6 years ago by
jjrin
▴ 40
6
votes
8
replies
5.6k
views
gffread error when extracting transcript sequences from gtf, coordinates exceed sequence length
cufflinks
stringtie
rnaseq
transcript
gffread
updated 7.6 years ago by
victor.gambarini
▴ 50 • written 7.6 years ago by
jjrin
▴ 40
0
votes
0
replies
2.2k
views
Comment:
C: Lots of antisense transcripts in my annotation?
7.6 years ago by
jjrin
▴ 40
4
votes
4
replies
2.2k
views
Lots of antisense transcripts in my annotation?
annotation
antisense
transcripts
7.6 years ago by
jjrin
▴ 40
0
votes
0
replies
3.1k
views
Comment:
C: Lack of 5' UTR in genome?
7.6 years ago by
jjrin
▴ 40
1
vote
2
replies
3.1k
views
Lack of 5' UTR in genome?
gene
alignment
7.6 years ago by
jjrin
▴ 40
9
votes
16
replies
6.7k
views
Remove the last few bases from fasta sequences
RNA-Seq
fasta
updated 7.6 years ago by
Charles Plessy
★ 2.9k • written 7.6 years ago by
jjrin
▴ 40
0
votes
1
reply
6.7k
views
Comment:
C: Remove the last few bases from fasta sequences
7.6 years ago by
jjrin
▴ 40
0
votes
2
replies
6.7k
views
Comment:
C: Remove the last few bases from fasta sequences
7.6 years ago by
jjrin
▴ 40
0
votes
0
replies
6.7k
views
Comment:
C: Remove the last few bases from fasta sequences
7.6 years ago by
jjrin
▴ 40
0
votes
1
reply
6.7k
views
Comment:
C: Remove the last few bases from fasta sequences
7.6 years ago by
jjrin
▴ 40
1
vote
1
reply
29k
views
Comment:
C: replace fasta headers with another name in a text file
7.6 years ago by
jjrin
▴ 40
0
votes
0
replies
1.6k
views
Comment:
C: Unknown Error running GESS
7.6 years ago by
jjrin
▴ 40
1
vote
2
replies
1.6k
views
Unknown Error running GESS
RNA-Seq
software error
7.6 years ago by
jjrin
▴ 40
2
votes
5
replies
1.8k
views
Invalid reference '6L' even though naming of BAM files, fasta files, and gtf files are the same?
RNA-Seq
Assembly
updated 7.6 years ago by
Biostar
20 • written 7.6 years ago by
jjrin
▴ 40
0
votes
1
reply
1.8k
views
Comment:
C: Invalid reference '6L' even though naming of BAM files, fasta files, and gtf fil
7.6 years ago by
jjrin
▴ 40
0
votes
1
reply
1.8k
views
Comment:
C: Invalid reference '6L' even though naming of BAM files, fasta files, and gtf fil
7.6 years ago by
jjrin
▴ 40
0
votes
0
replies
2.4k
views
Comment:
C: Identifying isoforms de novo
7.7 years ago by
jjrin
▴ 40
0
votes
1
reply
2.4k
views
Comment:
C: Identifying isoforms de novo
7.7 years ago by
jjrin
▴ 40
0
votes
0
replies
2.4k
views
Comment:
C: Identifying isoforms de novo
7.7 years ago by
jjrin
▴ 40
2
votes
6
replies
2.4k
views
Identifying isoforms de novo
RNA-Seq
gene
updated 7.7 years ago by
Istvan Albert
102k • written 7.7 years ago by
jjrin
▴ 40
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