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Comment: Comment: Comparing multiple columns from two files using AWK
7 months ago by emiliomastriani ▴ 40
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4
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540
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Comparing multiple columns from two files using AWK
awk
updated 7 months ago by 43k • written 7 months ago by ▴ 40
0
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5
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1.4k
views
minimap2, before or after assembly?
canu nanopore minimap2
updated 16 months ago by 6.4k • written 16 months ago by ▴ 40
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0
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1.4k
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Comment: Comment: minimap2, before or after assembly?
16 months ago by emiliomastriani ▴ 40
0
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1
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662
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Comment: Comment: combine headers from two fata files
19 months ago by emiliomastriani ▴ 40
1
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3
replies
662
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combine headers from two fasta files
fasta bash awk header
updated 18 months ago by 6.2k • written 19 months ago by ▴ 40
0
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0
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335
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Genome browsing from MethylDackel bedGraphCpG file
MethylDackel CpG Genome Annotation methylseq
23 months ago by emiliomastriani ▴ 40
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0
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993
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Comment: Comment: Diamond and Taxonomic information
23 months ago by emiliomastriani ▴ 40
0
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1
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993
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Diamond and Taxonomic information
diamond taxids taxonkit taxonomy
23 months ago by emiliomastriani ▴ 40
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0
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935
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Comment: Comment: Metagenomic quantification (abundance of reads on assembled reference)
24 months ago by emiliomastriani ▴ 40
0
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1
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935
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Comment: Comment: Metagenomic quantification (abundance of reads on assembled reference)
24 months ago by emiliomastriani ▴ 40
1
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4
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935
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Metagenomic quantification (abundance of reads on assembled reference)
viral-family viral-genus abundances metagenomic contigs
24 months ago by emiliomastriani ▴ 40
0
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0
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471
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Comment: Comment: From Methyl-Dackel to DMRs and DMCs
2.0 years ago by emiliomastriani ▴ 40
0
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1
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471
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From Methyl-Dackel to DMRs and DMCs
Methyl-Dackel methyl-seq
2.0 years ago by emiliomastriani ▴ 40
0
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0
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952
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Comment: Comment: DMR/CpG
2.1 years ago by emiliomastriani ▴ 40
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0
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952
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Comment: Comment: DMR/CpG
2.1 years ago by emiliomastriani ▴ 40
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4
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952
views
DMR/CpG
Methylation DMR CpG
2.1 years ago by emiliomastriani ▴ 40
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0
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436
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minimap2 overlap the same sequence
minimap2 yacrd overlap chimeric reads
2.1 years ago by emiliomastriani ▴ 40
0
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0
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952
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Comment: Comment: DMR/CpG
2.1 years ago by emiliomastriani ▴ 40
0
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1
reply
521
views
genome_updater FIX failed
NCBI viruses genome_updater.sh sequences
updated 2.2 years ago by • 0 • written 2.4 years ago by ▴ 40
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5
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1.3k
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blast returns staxid N/A and staxids 0
blastn staxid
updated 13 months ago by 43k • written 2.4 years ago by ▴ 40
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1
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1.3k
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Comment: Comment: blast returns staxid N/A and staxids 0
updated 2.4 years ago by 141k • written 2.4 years ago by ▴ 40
0
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1
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1.3k
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Comment: Comment: blast returns staxid N/A and staxids 0
2.4 years ago by emiliomastriani ▴ 40
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0
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2.3k
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Comment: Comment: ONT analysis on Ubuntu
2.4 years ago by emiliomastriani ▴ 40
1
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4
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2.3k
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ONT analysis on Ubuntu
guppy calling minknow base demultiplexing ubuntu
updated 2.3 years ago by ▴ 990 • written 2.4 years ago by ▴ 40
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0
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1.3k
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Comment: Comment: Creating BLASTN database for viruses
2.4 years ago by emiliomastriani ▴ 40
0
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1
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1.3k
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Comment: Comment: Creating BLASTN database for viruses
2.4 years ago by emiliomastriani ▴ 40
1
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4
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1.3k
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Creating BLASTN database for viruses
VSSI BLASTN database NCBI virus
2.4 years ago by emiliomastriani ▴ 40
0
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0
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2.6k
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Comment: Comment: kraken2-build and kraken-build both return error on viral db
2.4 years ago by emiliomastriani ▴ 40
0
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1
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2.6k
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Comment: Comment: kraken2-build and kraken-build both return error on viral db
2.4 years ago by emiliomastriani ▴ 40
0
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4
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2.6k
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kraken2-build and kraken-build both return error on viral db
viruses Kraken2-build Kraken-build db viral
2.4 years ago by emiliomastriani ▴ 40
0
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0
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1.3k
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Comment: Comment: MinION data organization
2.4 years ago by emiliomastriani ▴ 40
0
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3
replies
1.3k
views
MinION data organization
fast5 MinION barcodes
2.4 years ago by emiliomastriani ▴ 40
0
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0
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466
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Clustering in virome
Clustering Virome
2.5 years ago by emiliomastriani ▴ 40
0
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0
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490
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From sample to appropriate tool
Virus NGS Metagenomic Shotgun WGS
2.5 years ago by emiliomastriani ▴ 40
0
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1
reply
925
views
Diamond and Taxonomic information
daa megan taxonomy Diamond
updated 2.5 years ago by 100k • written 2.5 years ago by ▴ 40
0
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5
replies
1.6k
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Diamond blastx: does it support SLURM?
hpc diamond sbatch slurm
updated 2.5 years ago by 6.4k • written 2.5 years ago by ▴ 40
0
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1
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1.6k
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Comment: Comment: Diamond blastx: does it support SLURM?
2.5 years ago by emiliomastriani ▴ 40
0
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1
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1.6k
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Comment: Comment: Diamond blastx: does it support SLURM?
2.5 years ago by emiliomastriani ▴ 40
0
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1
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1.3k
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Comment: Comment: Removal of host sequences without reference genome
2.7 years ago by emiliomastriani ▴ 40
0
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2
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1.3k
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Removal of host sequences without reference genome
meta-genomic contaminants missing host reference genome viral
2.7 years ago by emiliomastriani ▴ 40
0
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0
replies
693
views
Retrieving site under selective pressure on MIME
hyphy virus selective-pressure MEME
updated 16 months ago by 43k • written 3.9 years ago by ▴ 40
0
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1
reply
612
views
Pseudogene Identification in HGU133PLUS2 using BioConductor
pseudogene hgu133plus2 oligo
updated 4.5 years ago by 87k • written 4.5 years ago by ▴ 40
0
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1
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1.5k
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Comment: C: Analyzing data from Agilent-023795 Human DNA Methylation Microarray 244k
5.4 years ago by emiliomastriani ▴ 40
0
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3
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1.5k
views
Analyzing data from Agilent-023795 Human DNA Methylation Microarray 244k
methylation agilent 244k CpG Chip-on-Chip
updated 5.4 years ago by 87k • written 5.4 years ago by ▴ 40
0
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0
replies
795
views
Subsetting or Remove Samples from dataset
subsetting samplesnames Illumina Agilent
5.5 years ago by emiliomastriani ▴ 40
3
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1
reply
955
views
Question: Reading methylationand gene expression with only IDAT files downloaded from GEO
HMk450
updated 5.5 years ago by 87k • written 5.5 years ago by ▴ 40
1
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3
replies
1.9k
views
Pseudogene identification and classification
gene pseudogene human
6.8 years ago by emiliomastriani ▴ 40
0
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1
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1.9k
views
Comment: A: Pseudogene identification and classification
6.8 years ago by emiliomastriani ▴ 40
49 results • Page 1 of 1
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