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Comment: Comment: TSNE plot dots that are close together assigned to different clusters.
2.2 years ago by bk11 ★ 3.1k
1
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0
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1.0k
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Answer: Answer: Differential gene expression with specif genes of interest
2.2 years ago by bk11 ★ 3.1k
0
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0
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2.2k
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Answer: Answer: Performing differential expression analysis after applying transformations on my
2.2 years ago by bk11 ★ 3.1k
2
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1
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1.7k
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Answer: Answer: is it correct to normalize batch corrected data?
2.2 years ago by bk11 ★ 3.1k
4
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0
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1.6k
views
Answer: Answer: Heatmap in R; how to change the order of Row names
updated 2.2 years ago by 45k • written 2.2 years ago by ★ 3.1k
1
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2
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2.0k
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Comment: Comment: Heatmap Annotation in R
2.2 years ago by bk11 ★ 3.1k
1
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1
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2.0k
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Answer: Answer: Heatmap Annotation in R
2.2 years ago by bk11 ★ 3.1k
0
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0
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985
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Answer: Answer: Question with manipulating OD gene list when running PCA
2.3 years ago by bk11 ★ 3.1k
1
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1
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1.1k
views
Answer: Answer: I have a FASTA file. I want to extract from some sequence using seqtk. What shou
2.3 years ago by bk11 ★ 3.1k
1
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1
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2.3k
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Answer: Answer: Microarray - multiple probe-ids matching to the same gene symbol but different e
2.3 years ago by bk11 ★ 3.1k
0
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1
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1.4k
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Answer: Answer: how to chage scaffold number
2.3 years ago by bk11 ★ 3.1k
0
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1
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2.7k
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Answer: Answer: matching gnomAD allele frequency
2.3 years ago by bk11 ★ 3.1k
2
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1
reply
2.0k
views
Answer: Answer: Can I aggregate visium data from different samples using harmony?
2.3 years ago by bk11 ★ 3.1k
2
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1
reply
1.4k
views
Answer: Answer: ComplexHeatmap with anno_barplot
2.3 years ago by bk11 ★ 3.1k
0
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1
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1.7k
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Answer: Answer: Why FindMarkers between conditions shows pct.1 and pct.2 as 1 for most of the ge
2.4 years ago by bk11 ★ 3.1k
0
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0
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1.2k
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Comment: Comment: About inconsistent cell counts per samples obtained in small nuclear RNAseq data
2.5 years ago by bk11 ★ 3.1k
0
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2
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1.2k
views
About inconsistent cell counts per samples obtained in small nuclear RNAseq data.
Seurat QC Single-Cell
2.5 years ago by bk11 ★ 3.1k
1
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0
replies
5.8k
views
Comment: Comment: How to add Seurat Object name in DimPlot title?
3.9 years ago by bk11 ★ 3.1k
3
votes
2
replies
5.8k
views
How to add Seurat Object name in DimPlot title?
Seurat R
updated 3.9 years ago by 13k • written 3.9 years ago by ★ 3.1k
1
vote
1
reply
1.2k
views
How to perform custom annotation using garfield_annotate_uk10k.sh script in GARFIELD tool?
R bash awk GWAS
updated 16 months ago by 45k • written 4.6 years ago by ★ 3.1k
3
votes
8
replies
3.4k
views
combine columns from multiple files
bash
updated 6.0 years ago by ▴ 100 • written 7.0 years ago by ★ 3.1k
1
vote
4
replies
3.1k
views
cvnkit: what is the problem here?
CNV NGS
updated 6.3 years ago by 20 • written 8.1 years ago by ★ 3.1k
2
votes
13
replies
3.3k
views
Extract gene lists using two files
Unix awk shell script
updated 6.4 years ago by 20 • written 8.1 years ago by ★ 3.1k
0
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0
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24k
views
Comment: C: Merging bed bim fam files from chromosome 1 to 22 at one time
6.8 years ago by bk11 ★ 3.1k
1
vote
3
replies
4.4k
views
Problem with newSCESet(countData=all.counts) function
single cell experiment single cell RNA seq
updated 6.8 years ago by 5.8k • written 6.8 years ago by ★ 3.1k
0
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0
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4.4k
views
Comment: C: Problem with newSCESet(countData=all.counts) function
6.8 years ago by bk11 ★ 3.1k
0
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0
replies
2.5k
views
Comment: C: target gene selection for miRNA
6.9 years ago by bk11 ★ 3.1k
1
vote
10
replies
4.5k
views
bedtools complement error
bedtools
updated 6.9 years ago by 36k • written 6.9 years ago by ★ 3.1k
0
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1
reply
4.5k
views
Comment: C: bedtools complement error
6.9 years ago by bk11 ★ 3.1k
0
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2
replies
4.5k
views
Comment: C: bedtools complement error
6.9 years ago by bk11 ★ 3.1k
0
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1
reply
2.7k
views
Comment: C: How to identify RNA-seq mapped reads to reference genome but not identified by f
6.9 years ago by bk11 ★ 3.1k
0
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1
reply
2.7k
views
Comment: C: How to identify RNA-seq mapped reads to reference genome but not identified by f
6.9 years ago by bk11 ★ 3.1k
2
votes
6
replies
2.7k
views
How to identify RNA-seq mapped reads to reference genome but not identified by featurecounts of Subread package?
RNA-Seq featureCounts HISAT2
updated 6.9 years ago by ★ 4.2k • written 6.9 years ago by ★ 3.1k
5
votes
17
replies
4.0k
views
awk and sed in bash script and no output
bash sed awk
updated 7.0 years ago by 36k • written 7.0 years ago by ★ 3.1k
0
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1
reply
4.0k
views
Comment: C: awk and sed in bash script and no output
7.0 years ago by bk11 ★ 3.1k
0
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1
reply
4.0k
views
Comment: C: awk and sed in bash script and no output
7.0 years ago by bk11 ★ 3.1k
0
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0
replies
4.0k
views
Comment: C: awk and sed in bash script and no output
7.0 years ago by bk11 ★ 3.1k
0
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1
reply
4.0k
views
Comment: C: awk and sed in bash script and no output
7.0 years ago by bk11 ★ 3.1k
0
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1
reply
3.4k
views
Comment: C: combine columns from multiple files
7.0 years ago by bk11 ★ 3.1k
0
votes
1
reply
2.3k
views
Comment: C: Add text in somewhere middle of line using information from the same line in fil
updated 7.0 years ago by 45k • written 7.0 years ago by ★ 3.1k
1
vote
1
reply
2.3k
views
Comment: C: Add text in somewhere middle of line using information from the same line in fil
7.1 years ago by bk11 ★ 3.1k
12
votes
12
replies
2.3k
views
Add text in somewhere middle of line using information from the same line in file.
sed awk unix
updated 7.1 years ago by 22k • written 7.1 years ago by ★ 3.1k
0
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1
reply
2.3k
views
Comment: C: Add text in somewhere middle of line using information from the same line in fil
7.1 years ago by bk11 ★ 3.1k
0
votes
1
reply
1.8k
views
Comment: C: Heatmap using publicly available Chip-Seq data
7.1 years ago by bk11 ★ 3.1k
0
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1
reply
1.8k
views
Comment: C: Heatmap using publicly available Chip-Seq data
7.1 years ago by bk11 ★ 3.1k
0
votes
5
replies
1.8k
views
Heatmap using publicly available Chip-Seq data
ChIP-Seq heatmap bigBed bigWig Blueprint
7.1 years ago by bk11 ★ 3.1k
1
vote
3
replies
1.4k
views
Calculating average using information from three different columns of a file.
Unix R Python
updated 7.1 years ago by 12k • written 7.1 years ago by ★ 3.1k
0
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1
reply
3.9k
views
Comment: C: Quantile Normalization in R and output data
7.1 years ago by bk11 ★ 3.1k
1
vote
3
replies
3.9k
views
Quantile Normalization in R and output data
R Data normalization
7.1 years ago by bk11 ★ 3.1k
1
vote
1
reply
19k
views
Comment: C: Quantile Normalization in R
7.1 years ago by bk11 ★ 3.1k
474 results • Page 9 of 10
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