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5
votes
4
replies
6.4k
views
6 follow
Classic threshold for log2 fold change in RNA-seq experiment
RNA-Seq
updated 5 months ago by
May Ling
▴ 10 • written 4.4 years ago by
Mozart
▴ 330
3
votes
2
replies
749
views
Input source for the IPA tool
IPA
RNA-seq
3.2 years ago by
Mozart
▴ 330
0
votes
0
replies
749
views
Comment:
Comment: Input source for the IPA tool
3.2 years ago by
Mozart
▴ 330
2
votes
2
replies
1.2k
views
EM algorithm in Kallisto
RNA-seq
Kallisto
3.2 years ago by
Mozart
▴ 330
0
votes
0
replies
1.2k
views
Comment:
Comment: EM algorithm in Kallisto
3.2 years ago by
Mozart
▴ 330
0
votes
0
replies
1.2k
views
Comment:
Comment: Kallisto Bootstrapping and deseq2
3.2 years ago by
Mozart
▴ 330
5
votes
2
replies
1.2k
views
Kallisto Bootstrapping and deseq2
Deseq2
3.2 years ago by
Mozart
▴ 330
0
votes
1
reply
1.3k
views
Comment:
Comment: Adapter trimming with trimmomatic
3.2 years ago by
Mozart
▴ 330
0
votes
3
replies
1.3k
views
Adapter trimming with trimmomatic
trimmomatic
RNAseq
updated 3.2 years ago by
GenoMax
147k • written 3.2 years ago by
Mozart
▴ 330
0
votes
0
replies
948
views
Comment:
C: Annotating two columns at the same time
3.8 years ago by
Mozart
▴ 330
2
votes
8
replies
948
views
Annotating two columns at the same time
RNA-Seq
r
3.8 years ago by
Mozart
▴ 330
0
votes
2
replies
948
views
Comment:
A: Annotating two columns at the same time
3.8 years ago by
Mozart
▴ 330
15
votes
14
replies
2.1k
views
how can interpret these biologically weird results?
RNA-Seq
updated 3.8 years ago by
Biostar
20 • written 7.0 years ago by
Mozart
▴ 330
0
votes
1
reply
948
views
Comment:
C: Annotating two columns at the same time
3.8 years ago by
Mozart
▴ 330
0
votes
0
replies
1.1k
views
Comment:
C: Network analysis: where to start?
4.0 years ago by
Mozart
▴ 330
0
votes
1
reply
1.1k
views
Comment:
C: Network analysis: where to start?
4.0 years ago by
Mozart
▴ 330
3
votes
5
replies
1.1k
views
Network analysis: where to start?
RNA-Seq
network analysis
updated 4.1 years ago by
Bogdan
★ 1.4k • written 4.1 years ago by
Mozart
▴ 330
0
votes
1
reply
1.5k
views
Comment:
C: PCA plots and biological information taken from other principal components
4.1 years ago by
Mozart
▴ 330
0
votes
1
reply
817
views
Convergence of betas, iterations arguments with nbinomialWaldTest
RNA-Seq
4.1 years ago by
Mozart
▴ 330
1
vote
1
reply
1.2k
views
Meta Analysis on RNA-seq data
RNA-Seq
meta analysis
updated 4.2 years ago by
Biostar
20 • written 4.3 years ago by
Mozart
▴ 330
0
votes
0
replies
1.3k
views
Comment:
C: List of uniquely expressed genes
4.2 years ago by
Mozart
▴ 330
0
votes
1
reply
1.3k
views
Comment:
C: List of uniquely expressed genes
4.2 years ago by
Mozart
▴ 330
0
votes
1
reply
1.3k
views
Comment:
C: List of uniquely expressed genes
4.2 years ago by
Mozart
▴ 330
0
votes
6
replies
1.3k
views
List of uniquely expressed genes
rna-seq
RNA-Seq
counts
4.2 years ago by
Mozart
▴ 330
1
vote
1
reply
927
views
Gene annotation outputs NA values for real genes
RNA-Seq
annotation
4.3 years ago by
Mozart
▴ 330
0
votes
0
replies
6.6k
views
Comment:
C: "Enhanced Volcano" package - how to set p adjusted cut off?
4.3 years ago by
Mozart
▴ 330
0
votes
1
reply
6.6k
views
Comment:
C: "Enhanced Volcano" package - how to set p adjusted cut off?
4.3 years ago by
Mozart
▴ 330
0
votes
0
replies
929
views
Comment:
C: Differential expression analysis in DESeq2 for an experiment with multiple varia
4.4 years ago by
Mozart
▴ 330
1
vote
2
replies
929
views
Differential expression analysis in DESeq2 for an experiment with multiple variable
deseq2
RNA-Seq
updated 4.4 years ago by
ATpoint
85k • written 4.4 years ago by
Mozart
▴ 330
2
votes
1
reply
629
views
Different trimming for different batches within the same experiment
trimming
RNA-Seq
4.4 years ago by
Mozart
▴ 330
20
votes
15
replies
7.9k
views
Kallisto-Sleuth or Kallisto-Deseq2?
RNA-Seq
updated 4.4 years ago by
jocelyn.petitto
▴ 20 • written 7.0 years ago by
Mozart
▴ 330
2
votes
1
reply
800
views
Differences when genome assembly changes in Kallisto
RNA-Seq
genome
4.4 years ago by
Mozart
▴ 330
0
votes
0
replies
1.4k
views
Comment:
C: Comparison between heat maps corrected with different algorithms
4.4 years ago by
Mozart
▴ 330
0
votes
1
reply
1.4k
views
Comment:
C: Comparison between heat maps corrected with different algorithms
4.4 years ago by
Mozart
▴ 330
0
votes
1
reply
1.4k
views
Comment:
C: Comparison between heat maps corrected with different algorithms
4.4 years ago by
Mozart
▴ 330
3
votes
1
reply
1.3k
views
Duplication level (RNA)
RNA-Seq
4.4 years ago by
Mozart
▴ 330
3
votes
2
replies
2.1k
views
biomaRt correct annotation but...
RNA-Seq
4.4 years ago by
Mozart
▴ 330
0
votes
2
replies
1.3k
views
Highly biased experiment showing funny histogram of p values for all tests. Suggestions?
deseq2
RNA-Seq
filtering
4.4 years ago by
Mozart
▴ 330
3
votes
3
replies
8.7k
views
Kallisto and downstream analysis with tximport and DESeq2
RNA-Seq
kallisto
tximport
deseq2
4.4 years ago by
Mozart
▴ 330
5
votes
4
replies
1.4k
views
same experiment, different values with my heat map. Any help?
RNA-Seq
heatmap
4.4 years ago by
Mozart
▴ 330
2
votes
5
replies
1.7k
views
Plotting PCA plot in DESeq2 on SVA corrected counts
sva
deseq2
pca
4.4 years ago by
Mozart
▴ 330
0
votes
1
reply
1.7k
views
Comment:
C: Plotting PCA plot in DESeq2 on SVA corrected counts
4.4 years ago by
Mozart
▴ 330
1
vote
6
replies
1.4k
views
Comparison between heat maps corrected with different algorithms
sva
updated 4.4 years ago by
Kevin Blighe
88k • written 4.4 years ago by
Mozart
▴ 330
0
votes
1
reply
1.6k
views
Comment:
C: Clarification about MA plot
4.4 years ago by
Mozart
▴ 330
1
vote
3
replies
1.6k
views
Clarification about MA plot
RNA-Seq
maplot
4.4 years ago by
Mozart
▴ 330
0
votes
0
replies
916
views
Conservative (unadjusted) p value histograms
RNA-Seq
4.4 years ago by
Mozart
▴ 330
0
votes
1
reply
1.7k
views
Comment:
C: Plotting PCA plot in DESeq2 on SVA corrected counts
4.4 years ago by
Mozart
▴ 330
0
votes
0
replies
2.6k
views
Comment:
C: Heatmap with just two columns
4.5 years ago by
Mozart
▴ 330
0
votes
1
reply
2.6k
views
Comment:
C: Heatmap with just two columns
4.5 years ago by
Mozart
▴ 330
2
votes
4
replies
2.6k
views
Heatmap with just two columns
RNA-Seq
heatmap
4.5 years ago by
Mozart
▴ 330
143 results • Page
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