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Comment: Comment: Downsampling dataset with more than 60 million reads
4 months ago by asalimih ▴ 60
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11k
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Comment: Comment: Bedtools: merge all features with the same id
16 months ago by asalimih ▴ 60
2
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1
reply
603
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Using GATK MarkDuplicates for targeted sequencing data
genomic gatk variant
updated 16 months ago by 82k • written 16 months ago by ▴ 60
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983
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Comment: Comment: Mutect2 read orientation bias filter effect on Somatic variant calling
16 months ago by asalimih ▴ 60
3
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2
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983
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Mutect2 read orientation bias filter effect on Somatic variant calling
somatic bias orientation mutect2
16 months ago by asalimih ▴ 60
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1
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1.9k
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Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
16 months ago by asalimih ▴ 60
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0
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1.1k
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Comment: Comment: Quality scores of base recalibrated Cram file
16 months ago by asalimih ▴ 60
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5.0k
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Comment: Comment: Mirdeep2 Error: FASTA reads file is not in accordance with the fasta format spec
18 months ago by asalimih ▴ 60
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0
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1.1k
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Comment: Comment: weird quality scores Cram to Fastq
18 months ago by asalimih ▴ 60
1
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9
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1.1k
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Quality scores of base recalibrated Cram file
fastq cram
16 months ago by asalimih ▴ 60
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0
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1.1k
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Comment: Comment: weird quality scores Cram to Fastq
18 months ago by asalimih ▴ 60
0
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0
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1.1k
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Comment: Comment: weird quality scores Cram to Fastq
18 months ago by asalimih ▴ 60
0
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1
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1.1k
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Comment: Comment: weird quality scores Cram to Fastq
18 months ago by asalimih ▴ 60
0
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1
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958
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Comment: Comment: Very high variant similarity between a couple
2.3 years ago by asalimih ▴ 60
0
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1
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958
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Comment: Comment: Very high variant similarity between a couple
2.3 years ago by asalimih ▴ 60
2
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4
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958
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Very high variant similarity between a couple
variant WES Consanguinity fastq
updated 2.3 years ago by ★ 2.9k • written 2.3 years ago by ▴ 60
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0
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2.0k
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Comment: Comment: Primer design for variants in duplicated genes?
2.4 years ago by asalimih ▴ 60
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1
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2.2k
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Answer: Answer: Coord_flip in R
2.4 years ago by asalimih ▴ 60
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0
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6.3k
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Comment: Comment: MSA of very long sequences?
2.4 years ago by asalimih ▴ 60
0
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0
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1.4k
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Comment: Comment: How to execute one command on all files within a directory
2.5 years ago by asalimih ▴ 60
0
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0
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516
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single gene GSEA
ssgsea gsea
2.5 years ago by asalimih ▴ 60
0
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1
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1.5k
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Comment: Comment: Cell type deconvolution from Bulk RNA-seq data
2.6 years ago by asalimih ▴ 60
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1
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1.8k
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Comment: Comment: bedtools getfasta concatenating sequences
2.6 years ago by asalimih ▴ 60
0
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3
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1.8k
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bedtools getfasta concatenating sequences
bedtools getfasta
updated 2.6 years ago by 8.5k • written 2.6 years ago by ▴ 60
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2
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1.4k
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Answer: Answer: How to execute one command on all files within a directory
2.6 years ago by asalimih ▴ 60
0
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0
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3.9k
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Comment: Comment: Getting exon sequences for all human genes
2.6 years ago by asalimih ▴ 60
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0
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5.5k
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Comment: Comment: Exon coordinates and sequence
2.6 years ago by asalimih ▴ 60
1
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1
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682
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Refseq annotation for processed/unprocessed Pseudogenes
refseq pseudogene annotation genomics
updated 2.6 years ago by 141k • written 2.6 years ago by ▴ 60
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0
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1.1k
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Comment: Comment: pseudogenes and their parent gene common regions
2.7 years ago by asalimih ▴ 60
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0
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1.1k
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Comment: Comment: pseudogenes and their parent gene common regions
2.7 years ago by asalimih ▴ 60
4
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4
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1.1k
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pseudogenes and their parent gene common regions
calling pseudogene genomics variant
2.7 years ago by asalimih ▴ 60
0
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1
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884
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Comment: Comment: tool or database to convert Gene ID to genomic position
2.7 years ago by asalimih ▴ 60
3
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3
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884
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tool or database to convert Gene ID to genomic position
hg38 gene conversion id
updated 2.7 years ago by 141k • written 2.7 years ago by ▴ 60
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1
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1.3k
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Comment: C: limma voom normalization of train and test set
3.6 years ago by asalimih ▴ 60
0
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3
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1.3k
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limma voom normalization of train and test set
limma machine learning RNA-Seq data leakage
3.6 years ago by asalimih ▴ 60
0
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1
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9.4k
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Comment: C: GSEA preranking metric for RNA Seq
4.2 years ago by asalimih ▴ 60
1
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0
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21k
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Answer: A: Microarray: How To Select One Of Multiple Probes Corresponding To A Gene
4.6 years ago by asalimih ▴ 60
0
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1
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1.8k
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Comment: C: frma normalization function not working on ExpressionFeatureSet object
4.6 years ago by asalimih ▴ 60
0
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1
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1.8k
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Comment: C: frma normalization function not working on ExpressionFeatureSet object
4.6 years ago by asalimih ▴ 60
0
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1
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1.8k
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Comment: C: frma normalization function not working on ExpressionFeatureSet object
4.6 years ago by asalimih ▴ 60
4
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10
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1.8k
views
frma normalization function not working on ExpressionFeatureSet object
microarray normalization frma preprocess rma
updated 4.6 years ago by 87k • written 4.6 years ago by ▴ 60
1
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0
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1.8k
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Comment: C: frma normalization function not working on ExpressionFeatureSet object
4.6 years ago by asalimih ▴ 60
0
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1
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1.7k
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Comment: C: Integration of Microarray datasets with different platforms and biological group
4.7 years ago by asalimih ▴ 60
0
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1
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1.7k
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Comment: C: Integration of Microarray datasets with different platforms and biological group
4.7 years ago by asalimih ▴ 60
0
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1
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1.7k
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Comment: C: Integration of Microarray datasets with different platforms and biological group
4.7 years ago by asalimih ▴ 60
0
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1
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1.7k
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Comment: C: Integration of Microarray datasets with different platforms and biological group
4.7 years ago by asalimih ▴ 60
6
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10
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1.7k
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Integration of Microarray datasets with different platforms and biological groups
limma microarray DEA batch-effect
updated 12 days ago by 43k • written 4.7 years ago by ▴ 60
2
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5
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1.9k
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Differential Expression Analysis with batches which have different biological groups
R RNA-Seq limma DE batch-effect
updated 12 days ago by 43k • written 4.8 years ago by ▴ 60
0
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0
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1.9k
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Answer: A: Differential Expression Analysis with batches which have different biological gr
4.8 years ago by asalimih ▴ 60
0
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0
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1.9k
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Comment: C: Differential Expression Analysis with batches which have different biological gr
4.8 years ago by asalimih ▴ 60
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