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2
votes
1
reply
604
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Using GATK MarkDuplicates for targeted sequencing data
genomic gatk variant
updated 16 months ago by 82k • written 16 months ago by ▴ 60
3
votes
2
replies
983
views
Mutect2 read orientation bias filter effect on Somatic variant calling
somatic bias orientation mutect2
16 months ago by asalimih ▴ 60
1
vote
9
replies
1.1k
views
Quality scores of base recalibrated Cram file
fastq cram
16 months ago by asalimih ▴ 60
2
votes
4
replies
958
views
Very high variant similarity between a couple
variant WES Consanguinity fastq
updated 2.3 years ago by ★ 2.9k • written 2.3 years ago by ▴ 60
0
votes
0
replies
516
views
single gene GSEA
ssgsea gsea
2.5 years ago by asalimih ▴ 60
0
votes
3
replies
1.8k
views
bedtools getfasta concatenating sequences
bedtools getfasta
updated 2.6 years ago by 8.5k • written 2.6 years ago by ▴ 60
1
vote
1
reply
682
views
Refseq annotation for processed/unprocessed Pseudogenes
refseq pseudogene annotation genomics
updated 2.6 years ago by 141k • written 2.6 years ago by ▴ 60
4
votes
4
replies
1.1k
views
pseudogenes and their parent gene common regions
calling pseudogene genomics variant
2.7 years ago by asalimih ▴ 60
3
votes
3
replies
885
views
tool or database to convert Gene ID to genomic position
hg38 gene conversion id
updated 2.7 years ago by 141k • written 2.7 years ago by ▴ 60
0
votes
3
replies
1.3k
views
limma voom normalization of train and test set
limma machine learning RNA-Seq data leakage
3.6 years ago by asalimih ▴ 60
4
votes
10
replies
1.8k
views
frma normalization function not working on ExpressionFeatureSet object
microarray normalization frma preprocess rma
updated 4.6 years ago by 87k • written 4.6 years ago by ▴ 60
6
votes
10
replies
1.7k
views
Integration of Microarray datasets with different platforms and biological groups
limma microarray DEA batch-effect
updated 12 days ago by 43k • written 4.7 years ago by ▴ 60
2
votes
5
replies
1.9k
views
Differential Expression Analysis with batches which have different biological groups
R RNA-Seq limma DE batch-effect
updated 12 days ago by 43k • written 4.8 years ago by ▴ 60
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