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143
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Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
annotation
vcf
vep
zygosity
deepvariant
5 days ago by
asalimih
▴ 60
0
votes
0
replies
128
views
Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep
vcf
gnomad
12 days ago by
asalimih
▴ 60
2
votes
1
reply
617
views
Using GATK MarkDuplicates for targeted sequencing data
genomic
gatk
variant
updated 16 months ago by
ATpoint
82k • written 16 months ago by
asalimih
▴ 60
3
votes
2
replies
1.0k
views
Mutect2 read orientation bias filter effect on Somatic variant calling
somatic
bias
orientation
mutect2
16 months ago by
asalimih
▴ 60
1
vote
9
replies
1.1k
views
Quality scores of base recalibrated Cram file
fastq
cram
17 months ago by
asalimih
▴ 60
2
votes
4
replies
975
views
Very high variant similarity between a couple
variant
WES
Consanguinity
fastq
updated 2.3 years ago by
German.M.Demidov
★ 2.9k • written 2.3 years ago by
asalimih
▴ 60
0
votes
0
replies
523
views
single gene GSEA
ssgsea
gsea
2.6 years ago by
asalimih
▴ 60
0
votes
3
replies
1.9k
views
bedtools getfasta concatenating sequences
bedtools
getfasta
updated 2.7 years ago by
Juke34
8.6k • written 2.7 years ago by
asalimih
▴ 60
1
vote
1
reply
689
views
Refseq annotation for processed/unprocessed Pseudogenes
refseq
pseudogene
annotation
genomics
updated 2.7 years ago by
GenoMax
142k • written 2.7 years ago by
asalimih
▴ 60
4
votes
4
replies
1.1k
views
pseudogenes and their parent gene common regions
calling
pseudogene
genomics
variant
2.7 years ago by
asalimih
▴ 60
3
votes
3
replies
898
views
tool or database to convert Gene ID to genomic position
hg38
gene
conversion
id
updated 2.7 years ago by
GenoMax
142k • written 2.7 years ago by
asalimih
▴ 60
0
votes
3
replies
1.3k
views
limma voom normalization of train and test set
limma
machine learning
RNA-Seq
data leakage
3.7 years ago by
asalimih
▴ 60
4
votes
10
replies
1.8k
views
frma normalization function not working on ExpressionFeatureSet object
microarray
normalization
frma
preprocess
rma
updated 4.7 years ago by
Kevin Blighe
88k • written 4.7 years ago by
asalimih
▴ 60
6
votes
10
replies
1.7k
views
Integration of Microarray datasets with different platforms and biological groups
limma
microarray
DEA
batch-effect
updated 4 weeks ago by
Ram
43k • written 4.7 years ago by
asalimih
▴ 60
2
votes
5
replies
1.9k
views
Differential Expression Analysis with batches which have different biological groups
R
RNA-Seq
limma
DE
batch-effect
updated 4 weeks ago by
Ram
43k • written 4.8 years ago by
asalimih
▴ 60
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