Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
123
views
Comment: Comment: Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
1 day ago by asalimih ▴ 60
0
votes
1
reply
123
views
Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
annotation vcf vep zygosity deepvariant
1 day ago by asalimih ▴ 60
0
votes
0
replies
121
views
Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep vcf gnomad
8 days ago by asalimih ▴ 60
0
votes
0
replies
32k
views
Comment: Comment: Downsampling dataset with more than 60 million reads
4 months ago by asalimih ▴ 60
0
votes
0
replies
11k
views
Comment: Comment: Bedtools: merge all features with the same id
16 months ago by asalimih ▴ 60
2
votes
1
reply
617
views
Using GATK MarkDuplicates for targeted sequencing data
genomic gatk variant
updated 16 months ago by 82k • written 16 months ago by ▴ 60
0
votes
0
replies
1.0k
views
Comment: Comment: Mutect2 read orientation bias filter effect on Somatic variant calling
16 months ago by asalimih ▴ 60
3
votes
2
replies
1.0k
views
Mutect2 read orientation bias filter effect on Somatic variant calling
somatic bias orientation mutect2
16 months ago by asalimih ▴ 60
1
vote
1
reply
1.9k
views
Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
16 months ago by asalimih ▴ 60
0
votes
0
replies
1.1k
views
Comment: Comment: Quality scores of base recalibrated Cram file
16 months ago by asalimih ▴ 60
0
votes
0
replies
5.0k
views
Comment: Comment: Mirdeep2 Error: FASTA reads file is not in accordance with the fasta format spec
18 months ago by asalimih ▴ 60
0
votes
0
replies
1.1k
views
Comment: Comment: weird quality scores Cram to Fastq
19 months ago by asalimih ▴ 60
1
vote
9
replies
1.1k
views
Quality scores of base recalibrated Cram file
fastq cram
16 months ago by asalimih ▴ 60
0
votes
0
replies
1.1k
views
Comment: Comment: weird quality scores Cram to Fastq
19 months ago by asalimih ▴ 60
0
votes
0
replies
1.1k
views
Comment: Comment: weird quality scores Cram to Fastq
19 months ago by asalimih ▴ 60
0
votes
1
reply
1.1k
views
Comment: Comment: weird quality scores Cram to Fastq
19 months ago by asalimih ▴ 60
0
votes
1
reply
972
views
Comment: Comment: Very high variant similarity between a couple
2.3 years ago by asalimih ▴ 60
0
votes
1
reply
972
views
Comment: Comment: Very high variant similarity between a couple
2.3 years ago by asalimih ▴ 60
2
votes
4
replies
972
views
Very high variant similarity between a couple
variant WES Consanguinity fastq
updated 2.3 years ago by ★ 2.9k • written 2.3 years ago by ▴ 60
0
votes
0
replies
2.0k
views
Comment: Comment: Primer design for variants in duplicated genes?
2.4 years ago by asalimih ▴ 60
1
vote
1
reply
2.2k
views
Answer: Answer: Coord_flip in R
2.4 years ago by asalimih ▴ 60
0
votes
0
replies
6.4k
views
Comment: Comment: MSA of very long sequences?
2.5 years ago by asalimih ▴ 60
0
votes
0
replies
1.4k
views
Comment: Comment: How to execute one command on all files within a directory
2.5 years ago by asalimih ▴ 60
0
votes
0
replies
522
views
single gene GSEA
ssgsea gsea
2.6 years ago by asalimih ▴ 60
0
votes
1
reply
1.5k
views
Comment: Comment: Cell type deconvolution from Bulk RNA-seq data
2.6 years ago by asalimih ▴ 60
0
votes
1
reply
1.9k
views
Comment: Comment: bedtools getfasta concatenating sequences
2.7 years ago by asalimih ▴ 60
0
votes
3
replies
1.9k
views
bedtools getfasta concatenating sequences
bedtools getfasta
updated 2.6 years ago by 8.6k • written 2.7 years ago by ▴ 60
0
votes
2
replies
1.4k
views
Answer: Answer: How to execute one command on all files within a directory
2.7 years ago by asalimih ▴ 60
0
votes
0
replies
4.0k
views
Comment: Comment: Getting exon sequences for all human genes
2.7 years ago by asalimih ▴ 60
0
votes
0
replies
5.6k
views
Comment: Comment: Exon coordinates and sequence
2.7 years ago by asalimih ▴ 60
1
vote
1
reply
688
views
Refseq annotation for processed/unprocessed Pseudogenes
refseq pseudogene annotation genomics
updated 2.7 years ago by 142k • written 2.7 years ago by ▴ 60
0
votes
0
replies
1.1k
views
Comment: Comment: pseudogenes and their parent gene common regions
2.7 years ago by asalimih ▴ 60
0
votes
0
replies
1.1k
views
Comment: Comment: pseudogenes and their parent gene common regions
2.7 years ago by asalimih ▴ 60
4
votes
4
replies
1.1k
views
pseudogenes and their parent gene common regions
calling pseudogene genomics variant
2.7 years ago by asalimih ▴ 60
0
votes
1
reply
896
views
Comment: Comment: tool or database to convert Gene ID to genomic position
2.7 years ago by asalimih ▴ 60
3
votes
3
replies
896
views
tool or database to convert Gene ID to genomic position
hg38 gene conversion id
updated 2.7 years ago by 142k • written 2.7 years ago by ▴ 60
0
votes
1
reply
1.3k
views
Comment: C: limma voom normalization of train and test set
3.7 years ago by asalimih ▴ 60
0
votes
3
replies
1.3k
views
limma voom normalization of train and test set
limma machine learning RNA-Seq data leakage
3.7 years ago by asalimih ▴ 60
0
votes
1
reply
9.5k
views
Comment: C: GSEA preranking metric for RNA Seq
4.2 years ago by asalimih ▴ 60
1
vote
0
replies
21k
views
Answer: A: Microarray: How To Select One Of Multiple Probes Corresponding To A Gene
4.7 years ago by asalimih ▴ 60
0
votes
1
reply
1.8k
views
Comment: C: frma normalization function not working on ExpressionFeatureSet object
4.7 years ago by asalimih ▴ 60
0
votes
1
reply
1.8k
views
Comment: C: frma normalization function not working on ExpressionFeatureSet object
4.7 years ago by asalimih ▴ 60
0
votes
1
reply
1.8k
views
Comment: C: frma normalization function not working on ExpressionFeatureSet object
4.7 years ago by asalimih ▴ 60
4
votes
10
replies
1.8k
views
frma normalization function not working on ExpressionFeatureSet object
microarray normalization frma preprocess rma
updated 4.7 years ago by 88k • written 4.7 years ago by ▴ 60
1
vote
0
replies
1.8k
views
Comment: C: frma normalization function not working on ExpressionFeatureSet object
4.7 years ago by asalimih ▴ 60
0
votes
1
reply
1.7k
views
Comment: C: Integration of Microarray datasets with different platforms and biological group
4.7 years ago by asalimih ▴ 60
0
votes
1
reply
1.7k
views
Comment: C: Integration of Microarray datasets with different platforms and biological group
4.7 years ago by asalimih ▴ 60
0
votes
1
reply
1.7k
views
Comment: C: Integration of Microarray datasets with different platforms and biological group
4.7 years ago by asalimih ▴ 60
0
votes
1
reply
1.7k
views
Comment: C: Integration of Microarray datasets with different platforms and biological group
4.7 years ago by asalimih ▴ 60
6
votes
10
replies
1.7k
views
Integration of Microarray datasets with different platforms and biological groups
limma microarray DEA batch-effect
updated 29 days ago by 43k • written 4.7 years ago by ▴ 60
58 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6