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0
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4
replies
4.2k
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how to generate genetic maps from VCF snps data
sequencing SNP
updated 5.5 years ago by ★ 90k • written 6.9 years ago by ▴ 120
0
votes
0
replies
1.1k
views
how to estimate founder and effective population size from snps data in VCF format
SNP
updated 5.7 years ago by 154k • written 5.7 years ago by ▴ 120
3
votes
2
replies
1.6k
views
Obtain VCF format file from imputed dosage format file using beagle2vcf
SNP
updated 6.1 years ago by • 0 • written 6.5 years ago by ▴ 120
5
votes
13
replies
9.9k
views
6 follow
Imputation of vcf file
SNP
updated 3.5 years ago by • 0 • written 6.9 years ago by ▴ 120
1
vote
0
replies
2.5k
views
how to obtain imputation accuracy - allelic R2 in beagle
SNP beagle
updated 6.5 years ago by 12k • written 6.5 years ago by ▴ 120
0
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0
replies
17k
views
Comment: C: How to combine chromosome vcf files
6.8 years ago by mab658 ▴ 120
0
votes
0
replies
4.4k
views
Comment: C: Calculate mean_GQ value from individual GQ values in a multi-sample VCF file
6.9 years ago by mab658 ▴ 120
4
votes
1
reply
3.0k
views
why filtering sites with allele count below 3
sequencing SNP
updated 6.9 years ago by 27k • written 6.9 years ago by ▴ 120
0
votes
0
replies
51k
views
Comment: C: How to filter vcf file on minimum genotype depth and quality for each sample
6.9 years ago by mab658 ▴ 120
2
votes
5
replies
10k
views
Conversion of imputed VCF file to HapMap format
RNA-Seq SNP
updated 6.9 years ago by • 0 • written 6.9 years ago by ▴ 120
0
votes
0
replies
11k
views
Comment: C: Filtering of low coverage variants from VCF
6.9 years ago by mab658 ▴ 120
0
votes
1
reply
9.9k
views
Comment: C: Imputation of vcf file
6.9 years ago by mab658 ▴ 120
0
votes
2
replies
9.9k
views
Comment: C: Imputation of vcf file
updated 6.9 years ago by ★ 90k • written 6.9 years ago by ▴ 120
0
votes
1
reply
9.9k
views
Comment: C: Imputation of vcf file
updated 6.9 years ago by ★ 90k • written 6.9 years ago by ▴ 120
0
votes
2
replies
3.2k
views
Conversion of imputed output file from beagle 4.1 to vcf dosage format
RNA-Seq SNP sequencing
updated 6.9 years ago by 45k • written 6.9 years ago by ▴ 120
0
votes
1
reply
16k
views
Comment: C: How to include/keep only the samples in a list in VCF.gz file?
6.9 years ago by mab658 ▴ 120
0
votes
1
reply
9.9k
views
Comment: C: Imputation of vcf file
6.9 years ago by mab658 ▴ 120
0
votes
1
reply
4.9k
views
Comment: C: filter out subset of samples from vcf file
6.9 years ago by mab658 ▴ 120
7
votes
4
replies
4.9k
views
filter out subset of samples from vcf file
SNP RNA-Seq sequencing
updated 6.9 years ago by 166k • written 6.9 years ago by ▴ 120
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