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Comment: Comment: Physical Protein size
10 weeks ago by Gabriel ▴ 150
2
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5
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579
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Physical Protein size
proteomics databases
updated 10 weeks ago by 54k • written 12 weeks ago by ▴ 150
0
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1
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890
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Best database for mouse scRNA-seq gene expression data ?
mouse atlas
updated 2.0 years ago by ▴ 110 • written 2.0 years ago by ▴ 150
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0
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305
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What are Acceptable QC stats for 10x scRNA-seq data?
doublets scRNAseq lysate nUMI
2.1 years ago by Gabriel ▴ 150
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0
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872
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Comment: Comment: What is a suitable metric to compute a cell-to-cell distance matrix
2.2 years ago by Gabriel ▴ 150
3
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2
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872
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What is a suitable metric to compute a cell-to-cell distance matrix
seurat KNN scran SNN adjacency
2.2 years ago by Gabriel ▴ 150
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0
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1.3k
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Comment: Comment: How to Estimate total variance in, and between RNA-seq datasets?
3.0 years ago by Gabriel ▴ 150
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1
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1.3k
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Comment: Comment: How to Estimate total variance in, and between RNA-seq datasets?
3.0 years ago by Gabriel ▴ 150
0
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4
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1.3k
views
How to Estimate total variance in, and between RNA-seq datasets?
batch variance correction
3.0 years ago by Gabriel ▴ 150
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0
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1.3k
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Comment: Comment: Using Statistical enrichment test for groups Principal Component Analysis
3.1 years ago by Gabriel ▴ 150
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0
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1.3k
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Comment: Comment: Using Statistical enrichment test for groups Principal Component Analysis
3.1 years ago by Gabriel ▴ 150
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5
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1.3k
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Using Statistical enrichment test for groups Principal Component Analysis
PCA
3.1 years ago by Gabriel ▴ 150
12
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8
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5.3k
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Is there a way to visualize log fold changes for Reactome pathways in R?
pathview RNA-Seq reactome bioconductor
updated 3.1 years ago by ▴ 430 • written 5.0 years ago by ▴ 150
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1
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3.4k
views
Cellranger output .bam file does Not contain barcodes ( CB and UB )
cellranger barcodes Velocyto chromium10x UMI
3.5 years ago by Gabriel ▴ 150
1
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3
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1.9k
views
iSEE singlecellexperiment GUI app on shinyapps not working, Troubleshooting
iSEE shiny scRNAseq
updated 3.6 years ago by ▴ 10 • written 3.6 years ago by ▴ 150
3
votes
3
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1.9k
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Is there a package for ORA where I can supply my own gmt files?
GO ORA geneset bioconductor gmt files
updated 3.8 years ago by ▴ 20 • written 4.2 years ago by ▴ 150
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1
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1.5k
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Comment: C: What causes strange oscillations in the count distribution of Salmon and STAR al
4.1 years ago by Gabriel ▴ 150
1
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6
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1.5k
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What causes strange oscillations in the count distribution of Salmon and STAR aligned gene tables?
salmon STAR counts filtering HTSeq
4.1 years ago by Gabriel ▴ 150
2
votes
7
replies
1.2k
views
Forum: Future prospects: NGS vs Gene editing (using CRISPR CAS9, AAVs and similar methods)
NGS CRISPR-Cas9
updated 10 months ago by 43k • written 4.6 years ago by ▴ 150
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3
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1.2k
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Comment: C: Future prospects: NGS vs Gene editing(using CRISPR CAS9, AAVs and similar method
4.6 years ago by Gabriel ▴ 150
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0
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2.0k
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Finding the official list of genes from Geneontology(GO) gene sets
GO genesets annotation RNA-Seq
updated 4.7 years ago by 20 • written 4.8 years ago by ▴ 150
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1
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1.1k
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Comment: C: Getting a list of up and down regulated genes in a pathway
4.8 years ago by Gabriel ▴ 150
2
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1
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1.1k
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Answer: A: Getting a list of up and down regulated genes in a pathway
4.8 years ago by Gabriel ▴ 150
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2
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50k
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Comment: A: Network plot from expression data in R using igraph
4.9 years ago by Gabriel ▴ 150
0
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1
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936
views
How to get wikipathways without disease and cancer ontologies?
wikipathways RNA-Seq GSEA gene ontology
5.0 years ago by Gabriel ▴ 150
22
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2
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18k
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What is the best way to rank genes for GSEA?
GSEA GO Gene ranking RNA-Seq
updated 21 months ago by ▴ 60 • written 5.0 years ago by ▴ 150
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0
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1.7k
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Comment: C: What causes Linear relations on MAplots?
5.1 years ago by Gabriel ▴ 150
3
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5
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1.7k
views
What causes Linear relations on MAplots?
maplot RNA-Seq logfold change
5.1 years ago by Gabriel ▴ 150
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1
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1.7k
views
Comment: C: What causes Linear relations on MAplots?
5.1 years ago by Gabriel ▴ 150
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