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0
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406
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Spatt2.1 a mirMap dependency, anyone know where I can get it?
miRmap dependency tarball
8 months ago by RNAseqer ▴ 300
0
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0
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962
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Comment: Comment: identifying 3'utrs for multiple transcripts of genes from a summarized experimen
8 months ago by RNAseqer ▴ 300
4
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2
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962
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identifying 3'utrs for multiple transcripts of genes from a summarized experiment.
biomart transcriptome utr
8 months ago by RNAseqer ▴ 300
1
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0
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1.2k
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Comment: Comment: samtools version 1.17 having difficulty parsing a filtering command. advice?
11 months ago by RNAseqer ▴ 300
1
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3
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1.2k
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samtools version 1.17 having difficulty parsing a filtering command. advice?
samtools cell rnaseq single
updated 11 months ago by ▴ 390 • written 11 months ago by ▴ 300
0
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3
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978
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Biomart issue, why so few 3'utrs?
utr biomart
updated 18 months ago by 154k • written 18 months ago by ▴ 300
0
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0
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807
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Comment: Comment: mirbase gff and mature fastas for custom STAR index genome?
19 months ago by RNAseqer ▴ 300
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1
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678
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sorted bam file generated from gff transcript fastas, how to get counts with HTseq?
htseq bam
updated 19 months ago by 45k • written 19 months ago by ▴ 300
0
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1
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807
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mirbase gff and mature fastas for custom STAR index genome?
mirbase indexing star genome
19 months ago by RNAseqer ▴ 300
0
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2
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1.9k
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Comment: Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
23 months ago by RNAseqer ▴ 300
3
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4
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1.9k
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Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not present in R
FDR volcano plotting R plot
updated 23 months ago by ★ 1.7k • written 23 months ago by ▴ 300
1
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2
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2.6k
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junction_annotation.py: How many 'novel' splice junctions/splice events are resonably expected from human RNA,
RNA-Seq junction_annotation.py human
updated 2.2 years ago by ▴ 20 • written 6.7 years ago by ▴ 300
2
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1
reply
1.4k
views
coef /makeContrasts very different results
makeContrasts coef2 edgeR
updated 2.5 years ago by ★ 8.5k • written 2.6 years ago by ▴ 300
0
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1
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1.4k
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mirge3.0 custom miRNA db option
database custom miRNA mirge3.0
updated 2.7 years ago by • 0 • written 4.4 years ago by ▴ 300
6
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2
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2.5k
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WGCNA: outputting multiple hubgenes from a module
WGCNA HubGenes
updated 3.3 years ago by ▴ 30 • written 5.4 years ago by ▴ 300
0
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0
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570
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custom sizing question in ggseqlogo. sequence logo creation
logo sequence R ggseqlogo
3.4 years ago by RNAseqer ▴ 300
0
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0
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565
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geo database for integrated miRNA-mRNA sequencing of neural cell
mir-seq mrna-seq
3.7 years ago by RNAseqer ▴ 300
0
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0
replies
571
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How to get a screeplot of surrogate variables from sva()
screeplot sva svaseq
3.7 years ago by RNAseqer ▴ 300
0
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0
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941
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WGCNA, module preservation over permutations, how to?
module WGCNA preservation
3.9 years ago by RNAseqer ▴ 300
0
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0
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11k
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Comment: Comment: convert from plink format into 012 format
3.9 years ago by RNAseqer ▴ 300
0
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0
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697
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what regression model does step() in R use
lm function R model stepwise
4.0 years ago by RNAseqer ▴ 300
0
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1
reply
1.3k
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How to extract beta coefficients from edgeR output
rnaseq beta coefficient r edger
updated 4.0 years ago by ★ 8.5k • written 4.1 years ago by ▴ 300
2
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1
reply
995
views
EdgeR exclude 0 count subjects for each gene
count edgeR R
updated 4.0 years ago by ★ 8.5k • written 4.0 years ago by ▴ 300
0
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0
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780
views
How do you convert vcf file to a genotype file useable by eigenstrat
conversion vcf format eigenstrat
4.0 years ago by RNAseqer ▴ 300
0
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0
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821
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accessing the r-peer docker container.
docker peer r
4.1 years ago by RNAseqer ▴ 300
0
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1
reply
1.0k
views
Analysis of a SNPs moderating effect on disease
SNP moderating-effect
updated 14 months ago by 45k • written 4.1 years ago by ▴ 300
0
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0
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1.5k
views
Comment: Comment: Most well regarded piRNA detection pipeline/program
4.1 years ago by RNAseqer ▴ 300
5
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2
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1.5k
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Most well regarded piRNA detection pipeline/program
expression piRNA differential smallRNAseq detection
4.1 years ago by RNAseqer ▴ 300
0
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0
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726
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how to identiify real isomers in mirge3.0's output files.
isomirs mirge3.0
4.1 years ago by RNAseqer ▴ 300
0
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0
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1.4k
views
REditools2 (HPC-reditools) de-novo editing prediction from RNAseq?
editing reditools2 prediction RNAseq
4.2 years ago by RNAseqer ▴ 300
0
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1
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1.3k
views
Comment: Comment: what is the best R package/function to perform an Equality of variance F-test on
4.3 years ago by RNAseqer ▴ 300
0
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3
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1.3k
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what is the best R package/function to perform an Equality of variance F-test on TMM log2 gene expression values
gene-expression F-test equality-of-variance
updated 4.3 years ago by 90k • written 4.3 years ago by ▴ 300
0
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0
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694
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Can you get individual sample counts from Spar (Small RNA-seq portal for analysis of sequencing experiments)
Differential RNAseq SPAR Expression
4.5 years ago by RNAseqer ▴ 300
0
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0
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772
views
getting residuals from dream
dream limma residuals
4.6 years ago by RNAseqer ▴ 300
0
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0
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792
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limma dream giving error message 'subscript out of bounds'
error Dream R
4.6 years ago by RNAseqer ▴ 300
0
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0
replies
1.2k
views
alternative package for littlesMCAR() or mcar_test()
littlesMCAR MCAR missingdata
4.6 years ago by RNAseqer ▴ 300
5
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2
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1.3k
views
Heirarchal regression for model comparison, RNA-seq
R RNA-seq heirarchalregression
updated 4.6 years ago by 90k • written 4.6 years ago by ▴ 300
0
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0
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2.3k
views
Comment: Comment: chi squared assesment of gene expression and batch effect
4.6 years ago by RNAseqer ▴ 300
1
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5
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2.3k
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chi squared assesment of gene expression and batch effect
RNA-Seq r chi squared
4.6 years ago by RNAseqer ▴ 300
0
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1
reply
1.5k
views
model matrix error message 'unequal columns/rows' when using a conditional variable
rna-seq categorical variables edger
updated 4.6 years ago by ★ 8.5k • written 4.7 years ago by ▴ 300
0
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1
reply
922
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Nesting a covariate for differential expression design
RNA-Seq nested covariates
updated 4.6 years ago by 20 • written 4.7 years ago by ▴ 300
0
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1
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2.3k
views
Comment: C: chi squared assesment of gene expression and batch effect
4.7 years ago by RNAseqer ▴ 300
1
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0
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1.1k
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Answer: A: voomWithDreamWeights() has missing "NA" wheights for last samples
4.7 years ago by RNAseqer ▴ 300
1
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1
reply
1.1k
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voomWithDreamWeights() has missing "NA" wheights for last samples
voomWithDreamWeights dream variaincePartition
4.7 years ago by RNAseqer ▴ 300
3
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4
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4.8k
views
GSEA pvalue output of 0.0. Can I make it more specific?
GSEA P-value
updated 4.7 years ago by ★ 1.0k • written 5.3 years ago by ▴ 300
0
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0
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7.7k
views
Comment: C: A question regarding log2 transformation in EdgeR
4.7 years ago by RNAseqer ▴ 300
14
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4
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7.7k
views
A question regarding log2 transformation in EdgeR
EdgeR log2 differentail expression analysis
updated 4.7 years ago by ★ 8.5k • written 4.7 years ago by ▴ 300
0
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1
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7.7k
views
Comment: C: A question regarding log2 transformation in EdgeR
4.7 years ago by RNAseqer ▴ 300
0
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0
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897
views
package for ICC plots from a matrix?
ICC plots R
4.8 years ago by RNAseqer ▴ 300
0
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0
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1.2k
views
Comment: C: Is miarma-Seq being maintained?
4.9 years ago by RNAseqer ▴ 300
133 results • Page 1 of 3
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