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2
votes
2
replies
893
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X chromosome in bedtoolsIntersect
bedtools
updated 12 months ago by 166k • written 12 months ago by ▴ 40
0
votes
1
reply
804
views
gene body coverage with RSeqQC
rna-seq qc
updated 18 months ago by ★ 2.1k • written 18 months ago by ▴ 40
0
votes
1
reply
976
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Comment: Comment: filtering lowly expressed exons
23 months ago by wiscoyogi ▴ 40
0
votes
3
replies
976
views
filtering lowly expressed exons
dexseq deseq2
updated 23 months ago by 89k • written 23 months ago by ▴ 40
0
votes
2
replies
854
views
Alignment prior to passing SAM/BAM to DEXSeq
STAR DEXSeq
updated 23 months ago by ▴ 80 • written 23 months ago by ▴ 40
2
votes
8
replies
2.5k
views
differential splicing between two groups for 5 genes
diffex genes IGV
updated 2.3 years ago by 4.8k • written 2.3 years ago by ▴ 40
0
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0
replies
2.5k
views
Comment: Comment: differential splicing between two groups for 5 genes
2.3 years ago by wiscoyogi ▴ 40
0
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0
replies
2.5k
views
Comment: Comment: differential splicing between two groups for 5 genes
2.3 years ago by wiscoyogi ▴ 40
0
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1
reply
1.4k
views
interpreting voom mean variance plots with large BCV and faint kink
filtering differential-expression voom gene
updated 2.7 years ago by ★ 8.3k • written 2.7 years ago by ▴ 40
2
votes
5
replies
1.6k
views
comparing fragmented RNA-seq to non-fragmented RNA-seq
voom differential fragmentation normalization limma
updated 3.3 years ago by ★ 8.3k • written 3.3 years ago by ▴ 40
0
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1
reply
1.6k
views
Comment: Comment: comparing fragmented RNA-seq to non-fragmented RNA-seq
3.3 years ago by wiscoyogi ▴ 40
0
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0
replies
1.6k
views
Comment: Comment: comparing fragmented RNA-seq to non-fragmented RNA-seq
3.3 years ago by wiscoyogi ▴ 40
0
votes
0
replies
1.9k
views
Comment: Comment: limma voom -- all genes after filtering are differentially expressed
3.3 years ago by wiscoyogi ▴ 40
1
vote
2
replies
1.9k
views
limma voom -- all genes after filtering are differentially expressed
expression differential voom RNAseq limma
updated 3.3 years ago by ★ 8.3k • written 3.3 years ago by ▴ 40
1
vote
1
reply
916
views
exact counts tables for limma voom guide
limma expression differential voom
updated 3.4 years ago by ★ 8.3k • written 3.4 years ago by ▴ 40
0
votes
1
reply
1.9k
views
Comment: Comment: unsorting a bam file
3.4 years ago by wiscoyogi ▴ 40
1
vote
0
replies
2.3k
views
Comment: Comment: How to normalize bulk and scRNA-seq data in order to compare them
3.4 years ago by wiscoyogi ▴ 40
0
votes
1
reply
1.9k
views
Comment: Comment: unsorting a bam file
3.4 years ago by wiscoyogi ▴ 40
2
votes
5
replies
1.9k
views
unsorting a bam file
star picard
updated 3.4 years ago by 15k • written 3.4 years ago by ▴ 40
1
vote
1
reply
2.3k
views
Answer: Answer: How to normalize bulk and scRNA-seq data in order to compare them
3.4 years ago by wiscoyogi ▴ 40
2
votes
6
replies
2.3k
views
diagnosing contamination in RNA-seq data
sequencing ngs bulk nonhuman
updated 3.7 years ago by 13k • written 3.7 years ago by ▴ 40
0
votes
2
replies
12k
views
Comment: Comment: downloading (and using) a NCBI BLAST database
3.7 years ago by wiscoyogi ▴ 40
0
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0
replies
12k
views
Comment: Comment: downloading (and using) a NCBI BLAST database
3.7 years ago by wiscoyogi ▴ 40
3
votes
13
replies
12k
views
downloading (and using) a NCBI BLAST database
blastn blast
updated 3.7 years ago by 56k • written 3.7 years ago by ▴ 40
0
votes
1
reply
12k
views
Comment: Comment: downloading (and using) a NCBI BLAST database
3.7 years ago by wiscoyogi ▴ 40
0
votes
1
reply
12k
views
Comment: Comment: downloading (and using) a NCBI BLAST database
3.7 years ago by wiscoyogi ▴ 40
0
votes
3
replies
3.3k
views
different ID for 'gene name' vs 'gene synonym' in ENSEMBL.
annotations gene Ensembl name
updated 4.1 years ago by 24k • written 4.1 years ago by ▴ 40
0
votes
0
replies
3.3k
views
Comment: Comment: different ID for 'gene name' vs 'gene synonym' in ENSEMBL.
4.1 years ago by wiscoyogi ▴ 40
0
votes
1
reply
1.9k
views
Comment: Comment: how htseq-count counts unstranded RNA-seq data
4.2 years ago by wiscoyogi ▴ 40
2
votes
3
replies
1.9k
views
how htseq-count counts unstranded RNA-seq data
htseq-count RNA-seq stranded
updated 4.2 years ago by 15k • written 4.2 years ago by ▴ 40
0
votes
1
reply
1.4k
views
TMM normalization for data across two sequencing batches
tmm normalization rnaseq
updated 4.5 years ago by 89k • written 4.5 years ago by ▴ 40
0
votes
1
reply
1.0k
views
Comment: C: comparing 2 datasets, one with high PCR duplicates
5.5 years ago by wiscoyogi ▴ 40
1
vote
0
replies
1.0k
views
Comment: C: comparing 2 datasets, one with high PCR duplicates
5.5 years ago by wiscoyogi ▴ 40
1
vote
5
replies
1.0k
views
comparing 2 datasets, one with high PCR duplicates
PCR duplicates data standardization RNA-Seq
5.5 years ago by wiscoyogi ▴ 40
1
vote
1
reply
2.2k
views
trimming A tails: clip3pAdapterSeq in star vs cutadapt
STAR RNA-Seq
6.1 years ago by wiscoyogi ▴ 40
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