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0
votes
1
reply
437
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Comment:
Comment: filtering lowly expressed exons
4 months ago by
wiscoyogi
▴ 40
0
votes
3
replies
437
views
filtering lowly expressed exons
dexseq
deseq2
updated 4 months ago by
ATpoint
81k • written 4 months ago by
wiscoyogi
▴ 40
0
votes
2
replies
343
views
Alignment prior to passing SAM/BAM to DEXSeq
STAR
DEXSeq
updated 4 months ago by
james.hawley
▴ 40 • written 4 months ago by
wiscoyogi
▴ 40
2
votes
8
replies
1.2k
views
differential splicing between two groups for 5 genes
diffex
genes
IGV
updated 9 months ago by
LauferVA
4.1k • written 9 months ago by
wiscoyogi
▴ 40
0
votes
0
replies
1.2k
views
Comment:
Comment: differential splicing between two groups for 5 genes
9 months ago by
wiscoyogi
▴ 40
0
votes
0
replies
1.2k
views
Comment:
Comment: differential splicing between two groups for 5 genes
9 months ago by
wiscoyogi
▴ 40
0
votes
1
reply
619
views
interpreting voom mean variance plots with large BCV and faint kink
filtering
differential-expression
voom
gene
updated 13 months ago by
Gordon Smyth
★ 6.9k • written 13 months ago by
wiscoyogi
▴ 40
2
votes
5
replies
933
views
comparing fragmented RNA-seq to non-fragmented RNA-seq
voom
differential
fragmentation
normalization
limma
updated 21 months ago by
Gordon Smyth
★ 6.9k • written 21 months ago by
wiscoyogi
▴ 40
0
votes
1
reply
933
views
Comment:
Comment: comparing fragmented RNA-seq to non-fragmented RNA-seq
21 months ago by
wiscoyogi
▴ 40
0
votes
0
replies
933
views
Comment:
Comment: comparing fragmented RNA-seq to non-fragmented RNA-seq
21 months ago by
wiscoyogi
▴ 40
0
votes
0
replies
1.2k
views
Comment:
Comment: limma voom -- all genes after filtering are differentially expressed
21 months ago by
wiscoyogi
▴ 40
1
vote
2
replies
1.2k
views
limma voom -- all genes after filtering are differentially expressed
expression
differential
voom
RNAseq
limma
updated 21 months ago by
Gordon Smyth
★ 6.9k • written 21 months ago by
wiscoyogi
▴ 40
1
vote
1
reply
514
views
exact counts tables for limma voom guide
limma
expression
differential
voom
updated 22 months ago by
Gordon Smyth
★ 6.9k • written 22 months ago by
wiscoyogi
▴ 40
0
votes
1
reply
1.0k
views
Comment:
Comment: unsorting a bam file
22 months ago by
wiscoyogi
▴ 40
1
vote
0
replies
1.1k
views
Comment:
Comment: How to normalize bulk and scRNA-seq data in order to compare them
22 months ago by
wiscoyogi
▴ 40
0
votes
1
reply
1.0k
views
Comment:
Comment: unsorting a bam file
22 months ago by
wiscoyogi
▴ 40
2
votes
5
replies
1.0k
views
unsorting a bam file
star
picard
updated 22 months ago by
swbarnes2
14k • written 22 months ago by
wiscoyogi
▴ 40
1
vote
1
reply
1.1k
views
Answer:
Answer: How to normalize bulk and scRNA-seq data in order to compare them
22 months ago by
wiscoyogi
▴ 40
2
votes
6
replies
1.2k
views
diagnosing contamination in RNA-seq data
sequencing
ngs
bulk
nonhuman
updated 2.1 years ago by
igor
13k • written 2.1 years ago by
wiscoyogi
▴ 40
0
votes
2
replies
5.7k
views
Comment:
Comment: downloading (and using) a NCBI BLAST database
2.1 years ago by
wiscoyogi
▴ 40
0
votes
0
replies
5.7k
views
Comment:
Comment: downloading (and using) a NCBI BLAST database
2.1 years ago by
wiscoyogi
▴ 40
3
votes
13
replies
5.7k
views
downloading (and using) a NCBI BLAST database
blastn
blast
updated 2.1 years ago by
Michael
54k • written 2.1 years ago by
wiscoyogi
▴ 40
0
votes
1
reply
5.7k
views
Comment:
Comment: downloading (and using) a NCBI BLAST database
2.1 years ago by
wiscoyogi
▴ 40
0
votes
1
reply
5.7k
views
Comment:
Comment: downloading (and using) a NCBI BLAST database
2.1 years ago by
wiscoyogi
▴ 40
0
votes
3
replies
1.8k
views
different ID for 'gene name' vs 'gene synonym' in ENSEMBL.
annotations
gene
Ensembl
name
updated 2.5 years ago by
Emily
23k • written 2.5 years ago by
wiscoyogi
▴ 40
0
votes
0
replies
1.8k
views
Comment:
Comment: different ID for 'gene name' vs 'gene synonym' in ENSEMBL.
2.5 years ago by
wiscoyogi
▴ 40
0
votes
1
reply
1.3k
views
Comment:
Comment: how htseq-count counts unstranded RNA-seq data
2.6 years ago by
wiscoyogi
▴ 40
2
votes
3
replies
1.3k
views
how htseq-count counts unstranded RNA-seq data
htseq-count
RNA-seq
stranded
updated 2.6 years ago by
swbarnes2
14k • written 2.6 years ago by
wiscoyogi
▴ 40
0
votes
1
reply
1.0k
views
TMM normalization for data across two sequencing batches
tmm
normalization
rnaseq
updated 3.0 years ago by
ATpoint
81k • written 3.0 years ago by
wiscoyogi
▴ 40
0
votes
1
reply
674
views
Comment:
C: comparing 2 datasets, one with high PCR duplicates
4.0 years ago by
wiscoyogi
▴ 40
1
vote
0
replies
674
views
Comment:
C: comparing 2 datasets, one with high PCR duplicates
4.0 years ago by
wiscoyogi
▴ 40
1
vote
5
replies
674
views
comparing 2 datasets, one with high PCR duplicates
PCR duplicates
data standardization
RNA-Seq
4.0 years ago by
wiscoyogi
▴ 40
1
vote
1
reply
1.8k
views
trimming A tails: clip3pAdapterSeq in star vs cutadapt
STAR
RNA-Seq
4.6 years ago by
wiscoyogi
▴ 40
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