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0
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0
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72
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Is it ok to use z-scores means for inter-sample comparison?
scRNA_seq RNA-seq
9 days ago by fifty_fifty ▴ 20
2
votes
2
replies
265
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GEO submission when I have raw data in SRA
GEO SRA scRNA-seq NCBI data
updated 10 weeks ago by 7.0k • written 10 weeks ago by ▴ 20
0
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0
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161
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RNA-seq raw counts normalization for survival analysis
survival tcga RNA-Seq r
3 months ago by fifty_fifty ▴ 20
0
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1
reply
362
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Comment: Comment: Integration of two TCGA datasets
3 months ago by fifty_fifty ▴ 20
0
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1
reply
362
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Comment: Comment: Integration of two TCGA datasets
3 months ago by fifty_fifty ▴ 20
2
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5
replies
362
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Integration of two TCGA datasets
r RNA-Seq tcga survival
updated 3 months ago by 77k • written 3 months ago by ▴ 20
1
vote
5
replies
852
views
How to use DEGs file for GSEA?
gsea RNA-Seq scRNA-seq Seurat
updated 4 months ago by • 0 • written 9 months ago by ▴ 20
0
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0
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427
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Comment: Comment: biomart returns several ensembl ids for one gene
5 months ago by fifty_fifty ▴ 20
0
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1
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427
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Comment: Comment: biomart returns several ensembl ids for one gene
5 months ago by fifty_fifty ▴ 20
0
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4
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427
views
biomart returns several ensembl ids for one gene
scrna-seq ensembl biomart r
5 months ago by fifty_fifty ▴ 20
0
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0
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150
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The best way to find cell differentiation path
differentiation fate biology fibroblasts scRNA-seq
5 months ago by fifty_fifty ▴ 20
0
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0
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852
views
Comment: C: How to use DEGs file for GSEA?
9 months ago by fifty_fifty ▴ 20
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1
reply
852
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Comment: C: How to use DEGs file for GSEA?
9 months ago by fifty_fifty ▴ 20
0
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0
replies
898
views
Reading count martix in scanpy
python scanpy scrna-seq seurat
11 months ago by fifty_fifty ▴ 20
0
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0
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551
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Answer: A: Merging previously merged object in Seurat
11 months ago by fifty_fifty ▴ 20
1
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1
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551
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Merging previously merged object in Seurat
scRNA-seq Seurat single-cell R RNA-Seq
11 months ago by fifty_fifty ▴ 20
0
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0
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541
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Comment: C: Survival analysis based on a set of genes for TCGA data
11 months ago by fifty_fifty ▴ 20
1
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2
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541
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Survival analysis based on a set of genes for TCGA data
tcga r RNA-Seq survival
updated 11 months ago by ★ 1.8k • written 11 months ago by ▴ 20
0
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5
replies
866
views
Filter out mouse reads from single cell RNA-seq of PDX tumor
RNA-Seq PDX
updated 14 months ago by • 0 • written 16 months ago by ▴ 20
0
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0
replies
543
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Filtering out mouse cells based on mouse/human genes ratio
RNA-Seq scRNAseq 10x cellranger
15 months ago by fifty_fifty ▴ 20
0
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0
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521
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Comment: C: Mapping reads to combined mouse and human genome
15 months ago by fifty_fifty ▴ 20
2
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2
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521
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Mapping reads to combined mouse and human genome
RNA-Seq alignment STAR rna-seq
updated 15 months ago by 108k • written 15 months ago by ▴ 20
0
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0
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866
views
Comment: C: Filter out mouse reads from single cell RNA-seq of PDX tumor
16 months ago by fifty_fifty ▴ 20
0
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1
reply
866
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Comment: C: Filter out mouse reads from single cell RNA-seq of PDX tumor
16 months ago by fifty_fifty ▴ 20
0
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0
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1.3k
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Comment: C: How to generate a mouse reference genome in STAR?
16 months ago by fifty_fifty ▴ 20
3
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2
replies
1.3k
views
How to generate a mouse reference genome in STAR?
genome alignment mouse RNA-Seq STAR
updated 16 months ago by ▴ 210 • written 16 months ago by ▴ 20
0
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0
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678
views
Comment: C: How to remove non protein coding genes from single cell pre-mRNA seq?
16 months ago by fifty_fifty ▴ 20
0
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0
replies
678
views
Comment: C: How to remove non protein coding genes from single cell pre-mRNA seq?
16 months ago by fifty_fifty ▴ 20
0
votes
1
reply
678
views
Comment: C: How to remove non protein coding genes from single cell pre-mRNA seq?
16 months ago by fifty_fifty ▴ 20
0
votes
1
reply
678
views
Comment: C: How to remove non protein coding genes from single cell pre-mRNA seq?
16 months ago by fifty_fifty ▴ 20
0
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12
replies
678
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How to remove non protein coding genes from single cell pre-mRNA seq?
RNA-Seq scRNA cellranger
updated 16 months ago by ★ 1.5k • written 16 months ago by ▴ 20
0
votes
1
reply
251
views
Knowledge bases/DBs to interpret genes relationships
RNA-Seq
21 months ago by fifty_fifty ▴ 20
32 results • Page 1 of 1
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