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Comment: Comment: Subclustering of intergated cells from scRNA-seq data
20 hours ago by fifty_fifty ▴ 60
2
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4
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227
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Subclustering of intergated cells from scRNA-seq data
scRNA-seq Seurat
20 hours ago by fifty_fifty ▴ 60
2
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5
replies
564
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How to distinguish between normal and malignant epithelial cells based on CNV?
scRNA-seq r CNV infercnv CNA
updated 19 days ago by 3.4k • written 24 days ago by ▴ 60
1
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1
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564
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Comment: Comment: How to distinguish between normal and malignant epithelial cells based on CNV?
22 days ago by fifty_fifty ▴ 60
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1
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564
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Comment: Comment: How to distinguish between normal and malignant epithelial cells based on CNV?
23 days ago by fifty_fifty ▴ 60
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0
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427
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Comment: Comment: InferCNV results interpretation
29 days ago by fifty_fifty ▴ 60
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4
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427
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InferCNV results interpretation
cnv scrna-seq r
29 days ago by fifty_fifty ▴ 60
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0
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405
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Comment: Comment: Lollipop visualization of VCF (SnpEff output)
12 weeks ago by fifty_fifty ▴ 60
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3
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405
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Lollipop visualization of VCF (SnpEff output)
snpEff SNP WES
updated 12 weeks ago by 157k • written 3 months ago by ▴ 60
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0
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244
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snpEff error. No CDS checked
snpEff gtf WES
4 months ago by fifty_fifty ▴ 60
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2
replies
331
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Variant calling in WES vs WGS
snpEff WGS SNPs WES
updated 4 months ago by ▴ 190 • written 4 months ago by ▴ 60
7
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5
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658
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RNA-seq analysis without replicates
DGE RNA-seq GSEA
updated 5 months ago by ▴ 60 • written 5 months ago by ▴ 60
0
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1
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385
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Does it make sense to analyze snRNA-seq data with low nUMI per gene?
scRNA-seq
updated 13 months ago by ▴ 760 • written 13 months ago by ▴ 60
2
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2
replies
502
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find pairwise transcriptional similarities between samples
RNA-seq r
updated 15 months ago by 53k • written 15 months ago by ▴ 60
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0
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260
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scRNA-seq benchmark data
scRNA_seq
16 months ago by fifty_fifty ▴ 60
1
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3
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523
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Aggregation of bulk RNA-seq
RNA-seq
updated 16 months ago by ▴ 760 • written 16 months ago by ▴ 60
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1
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627
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Comment: Comment: evaluation of Seurat clustering
18 months ago by fifty_fifty ▴ 60
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3
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627
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evaluation of Seurat clustering
scRNA-seq PCA Seurat
updated 18 months ago by 11k • written 18 months ago by ▴ 60
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1
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1.3k
views
How to refer to gene names in Seurat::PercentageFeatureSet()?
r seurat scRNA-seq
updated 20 months ago by ★ 15k • written 20 months ago by ▴ 60
1
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7
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1.8k
views
6 follow
Can't convert dog ensembl IDs into gene names
RNA-seq dog ensembl biomart
updated 21 months ago by ▴ 100 • written 21 months ago by ▴ 60
0
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1
reply
2.3k
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how to read h5 file in Seurat if its structure is not like 10x h5 file structure?
RNA-Seq single-cell scRNA-seq Seurat R
updated 5 weeks ago by 40k • written 21 months ago by ▴ 60
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0
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354
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Is it ok to use z-scores means for inter-sample comparison?
scRNA_seq RNA-seq
23 months ago by fifty_fifty ▴ 60
2
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2
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1.2k
views
GEO submission when I have raw data in SRA
GEO SRA scRNA-seq NCBI data
updated 2.1 years ago by 8.4k • written 2.1 years ago by ▴ 60
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0
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566
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RNA-seq raw counts normalization for survival analysis
survival tcga RNA-Seq r
2.2 years ago by fifty_fifty ▴ 60
0
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1
reply
820
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Comment: Comment: Integration of two TCGA datasets
2.2 years ago by fifty_fifty ▴ 60
0
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1
reply
820
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Comment: Comment: Integration of two TCGA datasets
2.2 years ago by fifty_fifty ▴ 60
3
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5
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820
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Integration of two TCGA datasets
r RNA-Seq tcga survival
updated 2.2 years ago by 86k • written 2.2 years ago by ▴ 60
2
votes
5
replies
2.5k
views
How to use DEGs file for GSEA?
gsea RNA-Seq scRNA-seq Seurat
updated 2.3 years ago by • 0 • written 2.7 years ago by ▴ 60
0
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0
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1.5k
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Comment: Comment: biomart returns several ensembl ids for one gene
2.4 years ago by fifty_fifty ▴ 60
0
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1
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1.5k
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Comment: Comment: biomart returns several ensembl ids for one gene
2.4 years ago by fifty_fifty ▴ 60
0
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4
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1.5k
views
biomart returns several ensembl ids for one gene
scrna-seq ensembl biomart r
2.4 years ago by fifty_fifty ▴ 60
1
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0
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367
views
The best way to find cell differentiation path
differentiation fate biology fibroblasts scRNA-seq
2.4 years ago by fifty_fifty ▴ 60
0
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0
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2.5k
views
Comment: C: How to use DEGs file for GSEA?
2.7 years ago by fifty_fifty ▴ 60
0
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1
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2.5k
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Comment: C: How to use DEGs file for GSEA?
2.7 years ago by fifty_fifty ▴ 60
0
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0
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2.6k
views
Reading count martix in scanpy
python scanpy scrna-seq seurat
2.8 years ago by fifty_fifty ▴ 60
1
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1
reply
1.2k
views
Merging previously merged object in Seurat
scRNA-seq Seurat single-cell R RNA-Seq
2.8 years ago by fifty_fifty ▴ 60
0
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0
replies
1.2k
views
Answer: A: Merging previously merged object in Seurat
2.8 years ago by fifty_fifty ▴ 60
0
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0
replies
2.2k
views
Comment: C: Survival analysis based on a set of genes for TCGA data
2.9 years ago by fifty_fifty ▴ 60
5
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3
replies
2.2k
views
Survival analysis based on a set of genes for TCGA data
tcga r RNA-Seq survival
updated 15 months ago by • 0 • written 2.9 years ago by ▴ 60
3
votes
5
replies
2.2k
views
Filter out mouse reads from single cell RNA-seq of PDX tumor
RNA-Seq PDX
updated 3.2 years ago by ▴ 10 • written 3.3 years ago by ▴ 60
0
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0
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1.0k
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Filtering out mouse cells based on mouse/human genes ratio
RNA-Seq scRNAseq 10x cellranger
3.2 years ago by fifty_fifty ▴ 60
0
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0
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1.4k
views
Comment: C: Mapping reads to combined mouse and human genome
3.2 years ago by fifty_fifty ▴ 60
2
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2
replies
1.4k
views
Mapping reads to combined mouse and human genome
RNA-Seq alignment STAR rna-seq
updated 3.2 years ago by 134k • written 3.2 years ago by ▴ 60
0
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0
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2.2k
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Comment: C: Filter out mouse reads from single cell RNA-seq of PDX tumor
3.3 years ago by fifty_fifty ▴ 60
0
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1
reply
2.2k
views
Comment: C: Filter out mouse reads from single cell RNA-seq of PDX tumor
3.3 years ago by fifty_fifty ▴ 60
0
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0
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2.8k
views
Comment: C: How to generate a mouse reference genome in STAR?
3.3 years ago by fifty_fifty ▴ 60
4
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2
replies
2.8k
views
How to generate a mouse reference genome in STAR?
genome alignment mouse RNA-Seq STAR
updated 3.3 years ago by ▴ 230 • written 3.3 years ago by ▴ 60
0
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0
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1.7k
views
Comment: C: How to remove non protein coding genes from single cell pre-mRNA seq?
3.3 years ago by fifty_fifty ▴ 60
0
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0
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1.7k
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Comment: C: How to remove non protein coding genes from single cell pre-mRNA seq?
3.3 years ago by fifty_fifty ▴ 60
0
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1
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1.7k
views
Comment: C: How to remove non protein coding genes from single cell pre-mRNA seq?
3.3 years ago by fifty_fifty ▴ 60
53 results • Page 1 of 2
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