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comments
0
votes
0
replies
227
views
Comment:
Comment: Subclustering of intergated cells from scRNA-seq data
20 hours ago by
fifty_fifty
▴ 60
2
votes
4
replies
227
views
Subclustering of intergated cells from scRNA-seq data
scRNA-seq
Seurat
20 hours ago by
fifty_fifty
▴ 60
2
votes
5
replies
564
views
How to distinguish between normal and malignant epithelial cells based on CNV?
scRNA-seq
r
CNV
infercnv
CNA
updated 19 days ago by
LChart
3.4k • written 24 days ago by
fifty_fifty
▴ 60
1
vote
1
reply
564
views
Comment:
Comment: How to distinguish between normal and malignant epithelial cells based on CNV?
22 days ago by
fifty_fifty
▴ 60
0
votes
1
reply
564
views
Comment:
Comment: How to distinguish between normal and malignant epithelial cells based on CNV?
23 days ago by
fifty_fifty
▴ 60
0
votes
0
replies
427
views
Comment:
Comment: InferCNV results interpretation
29 days ago by
fifty_fifty
▴ 60
1
vote
4
replies
427
views
InferCNV results interpretation
cnv
scrna-seq
r
29 days ago by
fifty_fifty
▴ 60
0
votes
0
replies
405
views
Comment:
Comment: Lollipop visualization of VCF (SnpEff output)
12 weeks ago by
fifty_fifty
▴ 60
0
votes
3
replies
405
views
Lollipop visualization of VCF (SnpEff output)
snpEff
SNP
WES
updated 12 weeks ago by
Pierre Lindenbaum
157k • written 3 months ago by
fifty_fifty
▴ 60
0
votes
0
replies
244
views
snpEff error. No CDS checked
snpEff
gtf
WES
4 months ago by
fifty_fifty
▴ 60
0
votes
2
replies
331
views
Variant calling in WES vs WGS
snpEff
WGS
SNPs
WES
updated 4 months ago by
Prash
▴ 190 • written 4 months ago by
fifty_fifty
▴ 60
7
votes
5
replies
658
views
RNA-seq analysis without replicates
DGE
RNA-seq
GSEA
updated 5 months ago by
zau saa
▴ 60 • written 5 months ago by
fifty_fifty
▴ 60
0
votes
1
reply
385
views
Does it make sense to analyze snRNA-seq data with low nUMI per gene?
scRNA-seq
updated 13 months ago by
ahmad mousavi
▴ 760 • written 13 months ago by
fifty_fifty
▴ 60
2
votes
2
replies
502
views
find pairwise transcriptional similarities between samples
RNA-seq
r
updated 15 months ago by
Michael
53k • written 15 months ago by
fifty_fifty
▴ 60
0
votes
0
replies
260
views
scRNA-seq benchmark data
scRNA_seq
16 months ago by
fifty_fifty
▴ 60
1
vote
3
replies
523
views
Aggregation of bulk RNA-seq
RNA-seq
updated 16 months ago by
Marco Pannone
▴ 760 • written 16 months ago by
fifty_fifty
▴ 60
0
votes
1
reply
627
views
Comment:
Comment: evaluation of Seurat clustering
18 months ago by
fifty_fifty
▴ 60
0
votes
3
replies
627
views
evaluation of Seurat clustering
scRNA-seq
PCA
Seurat
updated 18 months ago by
seidel
11k • written 18 months ago by
fifty_fifty
▴ 60
1
vote
1
reply
1.3k
views
How to refer to gene names in Seurat::PercentageFeatureSet()?
r
seurat
scRNA-seq
updated 20 months ago by
jared.andrews07
★ 15k • written 20 months ago by
fifty_fifty
▴ 60
1
vote
7
replies
1.8k
views
6 follow
Can't convert dog ensembl IDs into gene names
RNA-seq
dog
ensembl
biomart
updated 21 months ago by
tamerg
▴ 100 • written 21 months ago by
fifty_fifty
▴ 60
0
votes
1
reply
2.3k
views
how to read h5 file in Seurat if its structure is not like 10x h5 file structure?
RNA-Seq
single-cell
scRNA-seq
Seurat
R
updated 5 weeks ago by
Ram
40k • written 21 months ago by
fifty_fifty
▴ 60
0
votes
0
replies
354
views
Is it ok to use z-scores means for inter-sample comparison?
scRNA_seq
RNA-seq
23 months ago by
fifty_fifty
▴ 60
2
votes
2
replies
1.2k
views
GEO submission when I have raw data in SRA
GEO
SRA
scRNA-seq
NCBI
data
updated 2.1 years ago by
Carlo Yague
8.4k • written 2.1 years ago by
fifty_fifty
▴ 60
0
votes
0
replies
566
views
RNA-seq raw counts normalization for survival analysis
survival
tcga
RNA-Seq
r
2.2 years ago by
fifty_fifty
▴ 60
0
votes
1
reply
820
views
Comment:
Comment: Integration of two TCGA datasets
2.2 years ago by
fifty_fifty
▴ 60
0
votes
1
reply
820
views
Comment:
Comment: Integration of two TCGA datasets
2.2 years ago by
fifty_fifty
▴ 60
3
votes
5
replies
820
views
Integration of two TCGA datasets
r
RNA-Seq
tcga
survival
updated 2.2 years ago by
Kevin Blighe
86k • written 2.2 years ago by
fifty_fifty
▴ 60
2
votes
5
replies
2.5k
views
How to use DEGs file for GSEA?
gsea
RNA-Seq
scRNA-seq
Seurat
updated 2.3 years ago by
yeshiwork2000
• 0 • written 2.7 years ago by
fifty_fifty
▴ 60
0
votes
0
replies
1.5k
views
Comment:
Comment: biomart returns several ensembl ids for one gene
2.4 years ago by
fifty_fifty
▴ 60
0
votes
1
reply
1.5k
views
Comment:
Comment: biomart returns several ensembl ids for one gene
2.4 years ago by
fifty_fifty
▴ 60
0
votes
4
replies
1.5k
views
biomart returns several ensembl ids for one gene
scrna-seq
ensembl
biomart
r
2.4 years ago by
fifty_fifty
▴ 60
1
vote
0
replies
367
views
The best way to find cell differentiation path
differentiation
fate
biology
fibroblasts
scRNA-seq
2.4 years ago by
fifty_fifty
▴ 60
0
votes
0
replies
2.5k
views
Comment:
C: How to use DEGs file for GSEA?
2.7 years ago by
fifty_fifty
▴ 60
0
votes
1
reply
2.5k
views
Comment:
C: How to use DEGs file for GSEA?
2.7 years ago by
fifty_fifty
▴ 60
0
votes
0
replies
2.6k
views
Reading count martix in scanpy
python
scanpy
scrna-seq
seurat
2.8 years ago by
fifty_fifty
▴ 60
1
vote
1
reply
1.2k
views
Merging previously merged object in Seurat
scRNA-seq
Seurat
single-cell
R
RNA-Seq
2.8 years ago by
fifty_fifty
▴ 60
0
votes
0
replies
1.2k
views
Answer:
A: Merging previously merged object in Seurat
2.8 years ago by
fifty_fifty
▴ 60
0
votes
0
replies
2.2k
views
Comment:
C: Survival analysis based on a set of genes for TCGA data
2.9 years ago by
fifty_fifty
▴ 60
5
votes
3
replies
2.2k
views
Survival analysis based on a set of genes for TCGA data
tcga
r
RNA-Seq
survival
updated 15 months ago by
yussufhajjaj93
• 0 • written 2.9 years ago by
fifty_fifty
▴ 60
3
votes
5
replies
2.2k
views
Filter out mouse reads from single cell RNA-seq of PDX tumor
RNA-Seq
PDX
updated 3.2 years ago by
TC_Chang
▴ 10 • written 3.3 years ago by
fifty_fifty
▴ 60
0
votes
0
replies
1.0k
views
Filtering out mouse cells based on mouse/human genes ratio
RNA-Seq
scRNAseq
10x
cellranger
3.2 years ago by
fifty_fifty
▴ 60
0
votes
0
replies
1.4k
views
Comment:
C: Mapping reads to combined mouse and human genome
3.2 years ago by
fifty_fifty
▴ 60
2
votes
2
replies
1.4k
views
Mapping reads to combined mouse and human genome
RNA-Seq
alignment
STAR
rna-seq
updated 3.2 years ago by
GenoMax
134k • written 3.2 years ago by
fifty_fifty
▴ 60
0
votes
0
replies
2.2k
views
Comment:
C: Filter out mouse reads from single cell RNA-seq of PDX tumor
3.3 years ago by
fifty_fifty
▴ 60
0
votes
1
reply
2.2k
views
Comment:
C: Filter out mouse reads from single cell RNA-seq of PDX tumor
3.3 years ago by
fifty_fifty
▴ 60
0
votes
0
replies
2.8k
views
Comment:
C: How to generate a mouse reference genome in STAR?
3.3 years ago by
fifty_fifty
▴ 60
4
votes
2
replies
2.8k
views
How to generate a mouse reference genome in STAR?
genome
alignment
mouse
RNA-Seq
STAR
updated 3.3 years ago by
khorms
▴ 230 • written 3.3 years ago by
fifty_fifty
▴ 60
0
votes
0
replies
1.7k
views
Comment:
C: How to remove non protein coding genes from single cell pre-mRNA seq?
3.3 years ago by
fifty_fifty
▴ 60
0
votes
0
replies
1.7k
views
Comment:
C: How to remove non protein coding genes from single cell pre-mRNA seq?
3.3 years ago by
fifty_fifty
▴ 60
0
votes
1
reply
1.7k
views
Comment:
C: How to remove non protein coding genes from single cell pre-mRNA seq?
3.3 years ago by
fifty_fifty
▴ 60
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