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2
votes
2
replies
256
views
find pairwise transcriptional similarities between samples
RNA-seq r
updated 8 weeks ago by 52k • written 8 weeks ago by ▴ 30
0
votes
0
replies
129
views
scRNA-seq benchmark data
scRNA_seq
12 weeks ago by fifty_fifty ▴ 30
1
vote
3
replies
304
views
Aggregation of bulk RNA-seq
RNA-seq
updated 3 months ago by ▴ 440 • written 3 months ago by ▴ 30
0
votes
1
reply
312
views
Comment: Comment: evaluation of Seurat clustering
4 months ago by fifty_fifty ▴ 30
0
votes
3
replies
312
views
evaluation of Seurat clustering
scRNA-seq PCA Seurat
updated 4 months ago by 9.5k • written 5 months ago by ▴ 30
1
vote
1
reply
468
views
How to refer to gene names in Seurat::PercentageFeatureSet()?
r seurat scRNA-seq
updated 7 months ago by ★ 13k • written 7 months ago by ▴ 30
1
vote
7
replies
983
views
6 follow
Can't convert dog ensembl IDs into gene names
RNA-seq dog ensembl biomart
updated 7 months ago by ▴ 100 • written 7 months ago by ▴ 30
0
votes
0
replies
792
views
how to read h5 file in Seurat if its structure is not like 10x h5 file structure?
scRNA-seq R RNA-Seq Seurat single-cell
7 months ago by fifty_fifty ▴ 30
0
votes
0
replies
210
views
Is it ok to use z-scores means for inter-sample comparison?
scRNA_seq RNA-seq
10 months ago by fifty_fifty ▴ 30
2
votes
2
replies
715
views
GEO submission when I have raw data in SRA
GEO SRA scRNA-seq NCBI data
updated 12 months ago by 8.2k • written 12 months ago by ▴ 30
0
votes
0
replies
354
views
RNA-seq raw counts normalization for survival analysis
survival tcga RNA-Seq r
13 months ago by fifty_fifty ▴ 30
0
votes
1
reply
555
views
Comment: Comment: Integration of two TCGA datasets
13 months ago by fifty_fifty ▴ 30
0
votes
1
reply
555
views
Comment: Comment: Integration of two TCGA datasets
13 months ago by fifty_fifty ▴ 30
2
votes
5
replies
555
views
Integration of two TCGA datasets
r RNA-Seq tcga survival
updated 13 months ago by 82k • written 13 months ago by ▴ 30
2
votes
5
replies
1.6k
views
How to use DEGs file for GSEA?
gsea RNA-Seq scRNA-seq Seurat
updated 14 months ago by • 0 • written 19 months ago by ▴ 30
0
votes
0
replies
956
views
Comment: Comment: biomart returns several ensembl ids for one gene
15 months ago by fifty_fifty ▴ 30
0
votes
1
reply
956
views
Comment: Comment: biomart returns several ensembl ids for one gene
15 months ago by fifty_fifty ▴ 30
0
votes
4
replies
956
views
biomart returns several ensembl ids for one gene
scrna-seq ensembl biomart r
15 months ago by fifty_fifty ▴ 30
0
votes
0
replies
240
views
The best way to find cell differentiation path
differentiation fate biology fibroblasts scRNA-seq
15 months ago by fifty_fifty ▴ 30
0
votes
0
replies
1.6k
views
Comment: C: How to use DEGs file for GSEA?
19 months ago by fifty_fifty ▴ 30
0
votes
1
reply
1.6k
views
Comment: C: How to use DEGs file for GSEA?
19 months ago by fifty_fifty ▴ 30
0
votes
0
replies
1.8k
views
Reading count martix in scanpy
python scanpy scrna-seq seurat
20 months ago by fifty_fifty ▴ 30
1
vote
1
reply
867
views
Merging previously merged object in Seurat
scRNA-seq Seurat single-cell R RNA-Seq
20 months ago by fifty_fifty ▴ 30
0
votes
0
replies
867
views
Answer: A: Merging previously merged object in Seurat
20 months ago by fifty_fifty ▴ 30
0
votes
0
replies
1.3k
views
Comment: C: Survival analysis based on a set of genes for TCGA data
20 months ago by fifty_fifty ▴ 30
3
votes
3
replies
1.3k
views
Survival analysis based on a set of genes for TCGA data
tcga r RNA-Seq survival
updated 6 weeks ago by • 0 • written 21 months ago by ▴ 30
2
votes
5
replies
1.5k
views
Filter out mouse reads from single cell RNA-seq of PDX tumor
RNA-Seq PDX
updated 2.0 years ago by ▴ 10 • written 2.1 years ago by ▴ 30
0
votes
0
replies
786
views
Filtering out mouse cells based on mouse/human genes ratio
RNA-Seq scRNAseq 10x cellranger
2.1 years ago by fifty_fifty ▴ 30
0
votes
0
replies
909
views
Comment: C: Mapping reads to combined mouse and human genome
2.1 years ago by fifty_fifty ▴ 30
2
votes
2
replies
909
views
Mapping reads to combined mouse and human genome
RNA-Seq alignment STAR rna-seq
updated 2.1 years ago by 119k • written 2.1 years ago by ▴ 30
0
votes
0
replies
1.5k
views
Comment: C: Filter out mouse reads from single cell RNA-seq of PDX tumor
2.1 years ago by fifty_fifty ▴ 30
0
votes
1
reply
1.5k
views
Comment: C: Filter out mouse reads from single cell RNA-seq of PDX tumor
2.1 years ago by fifty_fifty ▴ 30
0
votes
0
replies
2.0k
views
Comment: C: How to generate a mouse reference genome in STAR?
2.2 years ago by fifty_fifty ▴ 30
3
votes
2
replies
2.0k
views
How to generate a mouse reference genome in STAR?
genome alignment mouse RNA-Seq STAR
updated 2.2 years ago by ▴ 210 • written 2.2 years ago by ▴ 30
0
votes
0
replies
1.1k
views
Comment: C: How to remove non protein coding genes from single cell pre-mRNA seq?
2.2 years ago by fifty_fifty ▴ 30
0
votes
0
replies
1.1k
views
Comment: C: How to remove non protein coding genes from single cell pre-mRNA seq?
2.2 years ago by fifty_fifty ▴ 30
0
votes
1
reply
1.1k
views
Comment: C: How to remove non protein coding genes from single cell pre-mRNA seq?
2.2 years ago by fifty_fifty ▴ 30
0
votes
1
reply
1.1k
views
Comment: C: How to remove non protein coding genes from single cell pre-mRNA seq?
2.2 years ago by fifty_fifty ▴ 30
0
votes
12
replies
1.1k
views
How to remove non protein coding genes from single cell pre-mRNA seq?
RNA-Seq scRNA cellranger
updated 2.2 years ago by ★ 1.6k • written 2.2 years ago by ▴ 30
0
votes
1
reply
324
views
Knowledge bases/DBs to interpret genes relationships
RNA-Seq
2.6 years ago by fifty_fifty ▴ 30
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