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141
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How can one determine if a sample size is representative in scRNA-seq analysis?
scRNA-seq
7 weeks ago by fifty_fifty ▴ 60
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0
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435
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Comment: Comment: Find Large-scale CNVs in whole exome sequencing
11 weeks ago by fifty_fifty ▴ 60
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0
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435
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Comment: Comment: Find Large-scale CNVs in whole exome sequencing
11 weeks ago by fifty_fifty ▴ 60
0
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1
reply
435
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Comment: Comment: Find Large-scale CNVs in whole exome sequencing
11 weeks ago by fifty_fifty ▴ 60
0
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6
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435
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Find Large-scale CNVs in whole exome sequencing
WES scRNA-seq CNV
11 weeks ago by fifty_fifty ▴ 60
0
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1
reply
564
views
Transfer harmony-integrated scRNA-seq data to scanpy
scRNA-seq harmony
updated 6 months ago by ▴ 90 • written 6 months ago by ▴ 60
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0
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662
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Comment: Comment: Subclustering of intergated cells from scRNA-seq data
6 months ago by fifty_fifty ▴ 60
2
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4
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662
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Subclustering of intergated cells from scRNA-seq data
scRNA-seq Seurat
6 months ago by fifty_fifty ▴ 60
2
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5
replies
1.4k
views
How to distinguish between normal and malignant epithelial cells based on CNV?
scRNA-seq r CNV infercnv CNA
updated 7 months ago by 3.9k • written 7 months ago by ▴ 60
1
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1
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1.4k
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Comment: Comment: How to distinguish between normal and malignant epithelial cells based on CNV?
7 months ago by fifty_fifty ▴ 60
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1
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1.4k
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Comment: Comment: How to distinguish between normal and malignant epithelial cells based on CNV?
7 months ago by fifty_fifty ▴ 60
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0
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2.3k
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Comment: Comment: InferCNV results interpretation
7 months ago by fifty_fifty ▴ 60
1
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5
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2.3k
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InferCNV results interpretation
cnv scrna-seq r
updated 10 weeks ago by • 0 • written 7 months ago by ▴ 60
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0
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757
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Comment: Comment: Lollipop visualization of VCF (SnpEff output)
9 months ago by fifty_fifty ▴ 60
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3
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757
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Lollipop visualization of VCF (SnpEff output)
snpEff SNP WES
updated 9 months ago by 161k • written 10 months ago by ▴ 60
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0
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430
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snpEff error. No CDS checked
snpEff gtf WES
10 months ago by fifty_fifty ▴ 60
0
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2
replies
578
views
Variant calling in WES vs WGS
snpEff WGS SNPs WES
updated 11 months ago by ▴ 270 • written 11 months ago by ▴ 60
7
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5
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1.0k
views
RNA-seq analysis without replicates
DGE RNA-seq GSEA
updated 12 months ago by ▴ 120 • written 12 months ago by ▴ 60
0
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1
reply
546
views
Does it make sense to analyze snRNA-seq data with low nUMI per gene?
scRNA-seq
updated 20 months ago by ▴ 800 • written 20 months ago by ▴ 60
2
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2
replies
590
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find pairwise transcriptional similarities between samples
RNA-seq r
updated 22 months ago by 54k • written 22 months ago by ▴ 60
0
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0
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347
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scRNA-seq benchmark data
scRNA_seq
23 months ago by fifty_fifty ▴ 60
1
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3
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675
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Aggregation of bulk RNA-seq
RNA-seq
updated 23 months ago by ▴ 790 • written 23 months ago by ▴ 60
0
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1
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799
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Comment: Comment: evaluation of Seurat clustering
2.1 years ago by fifty_fifty ▴ 60
0
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3
replies
799
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evaluation of Seurat clustering
scRNA-seq PCA Seurat
updated 2.1 years ago by 11k • written 2.1 years ago by ▴ 60
1
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1
reply
1.6k
views
How to refer to gene names in Seurat::PercentageFeatureSet()?
r seurat scRNA-seq
updated 2.3 years ago by ★ 16k • written 2.3 years ago by ▴ 60
1
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7
replies
2.3k
views
6 follow
Can't convert dog ensembl IDs into gene names
RNA-seq dog ensembl biomart
updated 2.3 years ago by ▴ 100 • written 2.3 years ago by ▴ 60
0
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1
reply
2.7k
views
how to read h5 file in Seurat if its structure is not like 10x h5 file structure?
RNA-Seq single-cell scRNA-seq Seurat R
updated 8 months ago by 43k • written 2.4 years ago by ▴ 60
0
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0
replies
436
views
Is it ok to use z-scores means for inter-sample comparison?
scRNA_seq RNA-seq
2.5 years ago by fifty_fifty ▴ 60
2
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2
replies
1.4k
views
GEO submission when I have raw data in SRA
GEO SRA scRNA-seq NCBI data
updated 2.7 years ago by 8.7k • written 2.7 years ago by ▴ 60
0
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0
replies
692
views
RNA-seq raw counts normalization for survival analysis
survival tcga RNA-Seq r
2.8 years ago by fifty_fifty ▴ 60
0
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1
reply
1000
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Comment: Comment: Integration of two TCGA datasets
2.8 years ago by fifty_fifty ▴ 60
0
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1
reply
1000
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Comment: Comment: Integration of two TCGA datasets
2.8 years ago by fifty_fifty ▴ 60
3
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5
replies
1000
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Integration of two TCGA datasets
r RNA-Seq tcga survival
updated 2.8 years ago by 87k • written 2.8 years ago by ▴ 60
2
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5
replies
3.0k
views
How to use DEGs file for GSEA?
gsea RNA-Seq scRNA-seq Seurat
updated 2.9 years ago by • 0 • written 3.3 years ago by ▴ 60
0
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0
replies
1.8k
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Comment: Comment: biomart returns several ensembl ids for one gene
3.0 years ago by fifty_fifty ▴ 60
0
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1
reply
1.8k
views
Comment: Comment: biomart returns several ensembl ids for one gene
3.0 years ago by fifty_fifty ▴ 60
0
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4
replies
1.8k
views
biomart returns several ensembl ids for one gene
scrna-seq ensembl biomart r
3.0 years ago by fifty_fifty ▴ 60
1
vote
0
replies
447
views
The best way to find cell differentiation path
differentiation fate biology fibroblasts scRNA-seq
3.0 years ago by fifty_fifty ▴ 60
0
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0
replies
3.0k
views
Comment: C: How to use DEGs file for GSEA?
3.3 years ago by fifty_fifty ▴ 60
0
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1
reply
3.0k
views
Comment: C: How to use DEGs file for GSEA?
3.3 years ago by fifty_fifty ▴ 60
0
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0
replies
2.8k
views
Reading count martix in scanpy
python scanpy scrna-seq seurat
3.4 years ago by fifty_fifty ▴ 60
1
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1
reply
1.3k
views
Merging previously merged object in Seurat
scRNA-seq Seurat single-cell R RNA-Seq
3.4 years ago by fifty_fifty ▴ 60
0
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0
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1.3k
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Answer: A: Merging previously merged object in Seurat
3.4 years ago by fifty_fifty ▴ 60
0
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0
replies
2.5k
views
Comment: C: Survival analysis based on a set of genes for TCGA data
3.4 years ago by fifty_fifty ▴ 60
5
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3
replies
2.5k
views
Survival analysis based on a set of genes for TCGA data
tcga r RNA-Seq survival
updated 22 months ago by • 0 • written 3.4 years ago by ▴ 60
3
votes
5
replies
2.5k
views
Filter out mouse reads from single cell RNA-seq of PDX tumor
RNA-Seq PDX
updated 3.7 years ago by ▴ 10 • written 3.8 years ago by ▴ 60
0
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0
replies
1.1k
views
Filtering out mouse cells based on mouse/human genes ratio
RNA-Seq scRNAseq 10x cellranger
3.8 years ago by fifty_fifty ▴ 60
0
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0
replies
1.6k
views
Comment: C: Mapping reads to combined mouse and human genome
3.8 years ago by fifty_fifty ▴ 60
2
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2
replies
1.6k
views
Mapping reads to combined mouse and human genome
RNA-Seq alignment STAR rna-seq
updated 3.8 years ago by 141k • written 3.8 years ago by ▴ 60
0
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0
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2.5k
views
Comment: C: Filter out mouse reads from single cell RNA-seq of PDX tumor
3.8 years ago by fifty_fifty ▴ 60
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