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9.0k
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Transfer harmony-integrated scRNA-seq data to scanpy
scRNA-seq harmony
updated 9 weeks ago by ▴ 20 • written 2.1 years ago by ▴ 90
3
votes
1
reply
796
views
How to Test Statistical Association Between Clusters and Conditions in scRNA-seq Data?
scRNA-seq
updated 10 months ago by ★ 19k • written 10 months ago by ▴ 90
0
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1
reply
766
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Harmony integration of integarted samples
scRNA-seq harmony
updated 14 months ago by ★ 19k • written 14 months ago by ▴ 90
0
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0
replies
2.1k
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Comment: Comment: CIBERSORTX disable quantile normalization
14 months ago by fifty_fifty ▴ 90
0
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1
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2.1k
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Comment: Comment: CIBERSORTX disable quantile normalization
14 months ago by fifty_fifty ▴ 90
3
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4
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2.1k
views
CIBERSORTX disable quantile normalization
RNA-seq
14 months ago by fifty_fifty ▴ 90
1
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0
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4.1k
views
Comment: Comment: Can't reproduce harmony results in Seurat
14 months ago by fifty_fifty ▴ 90
0
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1
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4.1k
views
Comment: Comment: Can't reproduce harmony results in Seurat
14 months ago by fifty_fifty ▴ 90
0
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0
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4.1k
views
Comment: Comment: Can't reproduce harmony results in Seurat
14 months ago by fifty_fifty ▴ 90
0
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0
replies
4.1k
views
Comment: Comment: Can't reproduce harmony results in Seurat
14 months ago by fifty_fifty ▴ 90
0
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1
reply
4.1k
views
Comment: Comment: Can't reproduce harmony results in Seurat
14 months ago by fifty_fifty ▴ 90
0
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1
reply
4.1k
views
Comment: Comment: Can't reproduce harmony results in Seurat
14 months ago by fifty_fifty ▴ 90
4
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13
replies
4.1k
views
Can't reproduce harmony results in Seurat
Seurat scRNA-seq harmony
14 months ago by fifty_fifty ▴ 90
0
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0
replies
377
views
How can one determine if a sample size is representative in scRNA-seq analysis?
scRNA-seq
20 months ago by fifty_fifty ▴ 90
0
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0
replies
1.3k
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Comment: Comment: Find Large-scale CNVs in whole exome sequencing
21 months ago by fifty_fifty ▴ 90
0
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0
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1.3k
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Comment: Comment: Find Large-scale CNVs in whole exome sequencing
21 months ago by fifty_fifty ▴ 90
0
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1
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1.3k
views
Comment: Comment: Find Large-scale CNVs in whole exome sequencing
21 months ago by fifty_fifty ▴ 90
0
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6
replies
1.3k
views
Find Large-scale CNVs in whole exome sequencing
WES scRNA-seq CNV
21 months ago by fifty_fifty ▴ 90
0
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0
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2.0k
views
Comment: Comment: Subclustering of intergated cells from scRNA-seq data
2.1 years ago by fifty_fifty ▴ 90
2
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4
replies
2.0k
views
Subclustering of intergated cells from scRNA-seq data
scRNA-seq Seurat
2.1 years ago by fifty_fifty ▴ 90
5
votes
5
replies
3.8k
views
How to distinguish between normal and malignant epithelial cells based on CNV?
scRNA-seq r CNV infercnv CNA
updated 2.2 years ago by 5.2k • written 2.2 years ago by ▴ 90
1
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1
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3.8k
views
Comment: Comment: How to distinguish between normal and malignant epithelial cells based on CNV?
2.2 years ago by fifty_fifty ▴ 90
0
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1
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3.8k
views
Comment: Comment: How to distinguish between normal and malignant epithelial cells based on CNV?
2.2 years ago by fifty_fifty ▴ 90
0
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0
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8.8k
views
Comment: Comment: InferCNV results interpretation
2.2 years ago by fifty_fifty ▴ 90
3
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7
replies
8.8k
views
6 follow
InferCNV results interpretation
cnv scrna-seq r
updated 16 months ago by • 0 • written 2.2 years ago by ▴ 90
0
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0
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1.6k
views
Comment: Comment: Lollipop visualization of VCF (SnpEff output)
2.4 years ago by fifty_fifty ▴ 90
0
votes
3
replies
1.6k
views
Lollipop visualization of VCF (SnpEff output)
snpEff SNP WES
updated 2.4 years ago by 166k • written 2.4 years ago by ▴ 90
0
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1
reply
990
views
snpEff error. No CDS checked
snpEff gtf WES
updated 16 months ago by • 0 • written 2.5 years ago by ▴ 90
0
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2
replies
1.3k
views
Variant calling in WES vs WGS
snpEff WGS SNPs WES
updated 2.5 years ago by ▴ 290 • written 2.5 years ago by ▴ 90
7
votes
5
replies
2.1k
views
RNA-seq analysis without replicates
DGE RNA-seq GSEA
updated 2.6 years ago by ▴ 150 • written 2.6 years ago by ▴ 90
0
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1
reply
1.0k
views
Does it make sense to analyze snRNA-seq data with low nUMI per gene?
scRNA-seq
updated 3.2 years ago by ▴ 800 • written 3.2 years ago by ▴ 90
2
votes
2
replies
1.0k
views
find pairwise transcriptional similarities between samples
RNA-seq r
updated 3.4 years ago by 56k • written 3.4 years ago by ▴ 90
0
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0
replies
583
views
scRNA-seq benchmark data
scRNA_seq
3.5 years ago by fifty_fifty ▴ 90
1
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3
replies
1.1k
views
Aggregation of bulk RNA-seq
RNA-seq
updated 3.5 years ago by ▴ 810 • written 3.5 years ago by ▴ 90
0
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1
reply
1.3k
views
Comment: Comment: evaluation of Seurat clustering
3.7 years ago by fifty_fifty ▴ 90
0
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3
replies
1.3k
views
evaluation of Seurat clustering
scRNA-seq PCA Seurat
updated 3.7 years ago by 11k • written 3.7 years ago by ▴ 90
1
vote
1
reply
2.3k
views
How to refer to gene names in Seurat::PercentageFeatureSet()?
r seurat scRNA-seq
updated 3.9 years ago by ★ 19k • written 3.9 years ago by ▴ 90
2
votes
8
replies
4.1k
views
7 follow
Can't convert dog ensembl IDs into gene names
RNA-seq dog ensembl biomart
updated 11 months ago by • 0 • written 3.9 years ago by ▴ 90
0
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1
reply
3.7k
views
how to read h5 file in Seurat if its structure is not like 10x h5 file structure?
RNA-Seq single-cell scRNA-seq Seurat R
updated 2.2 years ago by 45k • written 3.9 years ago by ▴ 90
0
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0
replies
642
views
Is it ok to use z-scores means for inter-sample comparison?
scRNA_seq RNA-seq
4.1 years ago by fifty_fifty ▴ 90
2
votes
2
replies
2.2k
views
GEO submission when I have raw data in SRA
GEO SRA scRNA-seq NCBI data
updated 4.3 years ago by 9.0k • written 4.3 years ago by ▴ 90
0
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0
replies
1.0k
views
RNA-seq raw counts normalization for survival analysis
survival tcga RNA-Seq r
4.4 years ago by fifty_fifty ▴ 90
0
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1
reply
1.8k
views
Comment: Comment: Integration of two TCGA datasets
4.4 years ago by fifty_fifty ▴ 90
0
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1
reply
1.8k
views
Comment: Comment: Integration of two TCGA datasets
4.4 years ago by fifty_fifty ▴ 90
3
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5
replies
1.8k
views
Integration of two TCGA datasets
r RNA-Seq tcga survival
updated 4.4 years ago by ★ 90k • written 4.4 years ago by ▴ 90
2
votes
5
replies
4.4k
views
How to use DEGs file for GSEA?
gsea RNA-Seq scRNA-seq Seurat
updated 4.5 years ago by • 0 • written 4.9 years ago by ▴ 90
0
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0
replies
2.5k
views
Comment: Comment: biomart returns several ensembl ids for one gene
4.6 years ago by fifty_fifty ▴ 90
0
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1
reply
2.5k
views
Comment: Comment: biomart returns several ensembl ids for one gene
4.6 years ago by fifty_fifty ▴ 90
0
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4
replies
2.5k
views
biomart returns several ensembl ids for one gene
scrna-seq ensembl biomart r
4.6 years ago by fifty_fifty ▴ 90
1
vote
0
replies
655
views
The best way to find cell differentiation path
differentiation fate biology fibroblasts scRNA-seq
4.6 years ago by fifty_fifty ▴ 90
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