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Comment: C: Plotting Exons Of A Transcript Using Bioconductor Genomegraphs
6.2 years ago by waqaskhokhar999 ▴ 160
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1
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1.6k
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Comment: C: Overlap between ranges
6.3 years ago by waqaskhokhar999 ▴ 160
0
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1
reply
1.2k
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Divide isoform expression by gene expression to calculate splicing ratios
RNA-Seq Assembly
6.3 years ago by waqaskhokhar999 ▴ 160
4
votes
3
replies
5.7k
views
Increase height of box plots in ggplot
R ggplot2 boxplot
updated 6.3 years ago by 36k • written 6.3 years ago by ▴ 160
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0
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5.7k
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Comment: C: Increase height of box plots in ggplot
6.3 years ago by waqaskhokhar999 ▴ 160
3
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7
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3.7k
views
Multiple reference alleles in vcf file
SNP
updated 6.3 years ago by ★ 3.0k • written 6.3 years ago by ▴ 160
0
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1
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3.7k
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Comment: C: Multiple reference alleles in vcf file
6.3 years ago by waqaskhokhar999 ▴ 160
1
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10
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2.0k
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Alignment of single-ended library distributed among different lanes
RNA-Seq alignment
updated 6.4 years ago by 20 • written 6.7 years ago by ▴ 160
0
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2
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1.5k
views
Plot association between genotype and splicing ratio using ggplot
SNP RNA-Seq ggplot
6.4 years ago by waqaskhokhar999 ▴ 160
0
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1
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2.5k
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Comment: A: Running prepare.py on remote server
6.4 years ago by waqaskhokhar999 ▴ 160
6
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3
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1.7k
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Numeric genotype to letters
SNP
updated 6.4 years ago by 13k • written 6.4 years ago by ▴ 160
2
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3
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1.6k
views
Overlap between ranges
RNA-Seq
updated 6.4 years ago by ★ 2.2k • written 6.4 years ago by ▴ 160
0
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1
reply
2.0k
views
Memory error during imputation of full genome data for multiple samples
SNP imputation beagle
updated 6.4 years ago by • 0 • written 6.4 years ago by ▴ 160
0
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1
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3.9k
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Comment: C: Convert the genotype format from numeric to letters
6.4 years ago by waqaskhokhar999 ▴ 160
0
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1
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3.9k
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Comment: C: Convert the genotype format from numeric to letters
6.4 years ago by waqaskhokhar999 ▴ 160
0
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0
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6.4k
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Comment: C: Convert numeric alleles into letters
6.4 years ago by waqaskhokhar999 ▴ 160
1
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2
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1.7k
views
Extract multi exonic genes from gtf files
RNA-Seq gtf exon
6.5 years ago by waqaskhokhar999 ▴ 160
0
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0
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1.7k
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Comment: C: Filter vaiants having no AF information
updated 6.5 years ago by 16k • written 6.5 years ago by ▴ 160
0
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1
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2.6k
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Comment: C: Estimate percentage of alternative splicing
6.5 years ago by waqaskhokhar999 ▴ 160
2
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6
replies
2.6k
views
Estimate percentage of alternative splicing
RNA-Seq Alternative splicing
updated 6.5 years ago by 8.3k • written 6.5 years ago by ▴ 160
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1
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1.7k
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Comment: C: Filter vaiants having no AF information
6.5 years ago by waqaskhokhar999 ▴ 160
0
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4
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1.7k
views
Filter vaiants having no AF information
snp minor allele frequency vcf
6.5 years ago by waqaskhokhar999 ▴ 160
0
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1
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6.7k
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Comment: C: Salmon installation error
6.5 years ago by waqaskhokhar999 ▴ 160
1
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1
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6.7k
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Answer: A: Salmon installation error
6.5 years ago by waqaskhokhar999 ▴ 160
0
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1
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3.2k
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Comment: C: Stringtie merge assembly with extra transcripts
6.5 years ago by waqaskhokhar999 ▴ 160
2
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3
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3.2k
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Stringtie merge assembly with extra transcripts
RNA-Seq Assembly stringtie-merge
updated 6.5 years ago by ▴ 410 • written 6.5 years ago by ▴ 160
4
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1
reply
3.1k
views
gffcompare class code 'j'
RNA-Seq gffcompare
updated 6.5 years ago by 154k • written 6.5 years ago by ▴ 160
0
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1
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6.5k
views
Comment: Comment: How can i extract FPKM from my GTF file which is created by stringtie?
updated 4.2 years ago by 45k • written 6.5 years ago by ▴ 160
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1
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6.5k
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Comment: C: How can i extract FPKM from my GTF file which is created by stringtie?
6.5 years ago by waqaskhokhar999 ▴ 160
0
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1
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6.1k
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Comment: C: TPM from StringTie
6.5 years ago by waqaskhokhar999 ▴ 160
0
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1
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2.0k
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Comment: C: Alignment of single-ended library distributed among different lanes
6.7 years ago by waqaskhokhar999 ▴ 160
0
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1
reply
2.0k
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Comment: C: Alignment of single-ended library distributed among different lanes
6.7 years ago by waqaskhokhar999 ▴ 160
0
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1
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2.0k
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Comment: C: Alignment of single-ended library distributed among different lanes
6.7 years ago by waqaskhokhar999 ▴ 160
0
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1
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2.0k
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Comment: C: Alignment of single-ended library distributed among different lanes
6.7 years ago by waqaskhokhar999 ▴ 160
0
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0
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1.9k
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Answer: A: Cut off for DE genes
7.0 years ago by waqaskhokhar999 ▴ 160
0
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1
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5.9k
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Comment: C: Bowtie indexes for custom reference genome
7.0 years ago by waqaskhokhar999 ▴ 160
2
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0
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5.9k
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Answer: A: Bowtie indexes for custom reference genome
7.0 years ago by waqaskhokhar999 ▴ 160
0
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3
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4.5k
views
Comment: C: limitations of Edge R or DEseq
7.0 years ago by waqaskhokhar999 ▴ 160
0
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1
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4.5k
views
Answer: A: limitations of Edge R or DEseq
7.0 years ago by waqaskhokhar999 ▴ 160
0
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0
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2.6k
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Comment: C: Trinity for single end library distributed among different lanes.
7.0 years ago by waqaskhokhar999 ▴ 160
0
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2
replies
2.6k
views
Trinity for single end library distributed among different lanes.
RNA-Seq Assembly
updated 7.0 years ago by 35k • written 7.0 years ago by ▴ 160
0
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0
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46k
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Comment: C: Pca From Vcf Files
7.0 years ago by waqaskhokhar999 ▴ 160
0
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0
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3.6k
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Comment: C: SNPRelate: how to give specific color to a population in PCA plot
7.0 years ago by waqaskhokhar999 ▴ 160
0
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1
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5.1k
views
Answer: A: stringtie and alternative splicing
7.0 years ago by waqaskhokhar999 ▴ 160
0
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0
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2.1k
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Alternative splicing from stringTie
RNA-Seq
7.0 years ago by waqaskhokhar999 ▴ 160
0
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2
replies
2.6k
views
Infer direction of paired end data
RNA-Seq
updated 7.0 years ago by 103k • written 7.0 years ago by ▴ 160
0
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0
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204k
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Comment: C: How to download raw sequence data from GEO/SRA
8.0 years ago by waqaskhokhar999 ▴ 160
0
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2
replies
204k
views
Comment: C: How to download raw sequence data from GEO/SRA
updated 8.0 years ago by 154k • written 8.0 years ago by ▴ 160
5
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1
reply
2.1k
views
Alternative splicing events in transcriptomic data
RNA-Seq
updated 9.6 years ago by 13k • written 9.6 years ago by ▴ 160
0
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0
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3.3k
views
Answer: A: Alternative Splice Reads
9.6 years ago by waqaskhokhar999 ▴ 160
100 results • Page 2 of 2
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