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Density vs gene count plot
metagenomics gene count wgs mgwas
updated 5.2 years ago by 3.4k • written 5.2 years ago by ▴ 250
0
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1
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1.9k
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Comment: C: Gene count vs Relative gene abundance
5.2 years ago by dpc ▴ 250
3
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8
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1.9k
views
Gene count vs Relative gene abundance
metagenomics wgs
updated 5.2 years ago by 9.0k • written 5.2 years ago by ▴ 250
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1
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1.9k
views
Comment: C: Gene count vs Relative gene abundance
5.2 years ago by dpc ▴ 250
0
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1
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1.9k
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Comment: C: Gene count vs Relative gene abundance
5.2 years ago by dpc ▴ 250
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0
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1.7k
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Comment: C: METAPHLAN: Getting genus level resolution but not family level
5.2 years ago by dpc ▴ 250
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0
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2.2k
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Comment: C: Softwares for statistitical analysis of MetaPhlAn output
5.2 years ago by dpc ▴ 250
0
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1
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2.2k
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Comment: C: Softwares for statistitical analysis of MetaPhlAn output
5.2 years ago by dpc ▴ 250
0
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2
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1.7k
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Comment: C: METAPHLAN: Getting genus level resolution but not family level
5.2 years ago by dpc ▴ 250
0
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1
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1.7k
views
Comment: C: METAPHLAN: Getting genus level resolution but not family level
5.2 years ago by dpc ▴ 250
0
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7
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1.7k
views
METAPHLAN: Getting genus level resolution but not family level
next-gen software error WGS metaphlan
5.2 years ago by dpc ▴ 250
1
vote
4
replies
2.2k
views
Softwares for statistitical analysis of MetaPhlAn output
next-gen sequencing metaphlan
updated 5.2 years ago by 3.4k • written 5.2 years ago by ▴ 250
0
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0
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2.9k
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Comment: C: fastqc result: whether trim off low quality reads or not
5.2 years ago by dpc ▴ 250
0
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5
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2.9k
views
fastqc result: whether trim off low quality reads or not
fastqc multiqc quality_check
updated 5.2 years ago by 15k • written 5.2 years ago by ▴ 250
0
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0
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2.5k
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Comment: C: Rarefaction curve of Shotgun metagenome
5.2 years ago by dpc ▴ 250
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1
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2.5k
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Comment: C: Rarefaction curve of Shotgun metagenome
5.2 years ago by dpc ▴ 250
0
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1
reply
4.0k
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Comment: C: Is MAPQ score related to Phred quality score?
5.2 years ago by dpc ▴ 250
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1
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4.0k
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Comment: C: Is MAPQ score related to Phred quality score?
5.2 years ago by dpc ▴ 250
0
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0
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1.9k
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Comment: C: Rarefaction of sequences before MetaPhlan analysis
5.2 years ago by dpc ▴ 250
4
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6
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4.0k
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Is MAPQ score related to Phred quality score?
MAPQ Phred quality score
updated 5.2 years ago by 23k • written 5.2 years ago by ▴ 250
0
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1
reply
1.9k
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Comment: C: Rarefaction of sequences before MetaPhlan analysis
5.2 years ago by dpc ▴ 250
0
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4
replies
1.9k
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Rarefaction of sequences before MetaPhlan analysis
wgs metaphlan rarefaction
5.2 years ago by dpc ▴ 250
0
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1
reply
2.4k
views
Relative abundance heatmap interpretation
heatmap microbiome
updated 5.2 years ago by 3.4k • written 5.2 years ago by ▴ 250
1
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2
replies
3.1k
views
stacked barplot color choice
phyloseq metagenomics 16s R
updated 5.2 years ago by 3.4k • written 5.2 years ago by ▴ 250
0
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0
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1.5k
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Comment: C: Cut off for "dist.seqs" and "cluster" step in MOTHUR for "genus" level analysis
5.2 years ago by dpc ▴ 250
0
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1
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1.5k
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Comment: C: Cut off for "dist.seqs" and "cluster" step in MOTHUR for "genus" level analysis
5.2 years ago by dpc ▴ 250
1
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4
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1.5k
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Cut off for "dist.seqs" and "cluster" step in MOTHUR for "genus" level analysis
mothur 16s metagenome
5.2 years ago by dpc ▴ 250
0
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1
reply
1.1k
views
Number of OTUs obtained from mothur analysis
mothur 16s otu
5.2 years ago by dpc ▴ 250
0
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0
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1.7k
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Comment: C: mothur output visualisation with Phyloseq: unable to order the x-axis
5.2 years ago by dpc ▴ 250
0
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1
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1.7k
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Comment: C: mothur output visualisation with Phyloseq: unable to order the x-axis
5.2 years ago by dpc ▴ 250
0
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7
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2.7k
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Heatmap of mothur output with Phyloseq
phyloseq mothur 16s metagenome
5.2 years ago by dpc ▴ 250
0
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0
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2.7k
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Answer: A: Heatmap of mothur output with Phyloseq
5.2 years ago by dpc ▴ 250
0
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1
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2.7k
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Comment: C: Heatmap of mothur output with Phyloseq
5.2 years ago by dpc ▴ 250
0
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4
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1.7k
views
mothur output visualisation with Phyloseq: unable to order the x-axis
phyloseq R 16s mothur
updated 5.2 years ago by 10k • written 5.2 years ago by ▴ 250
0
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1
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1.6k
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Comment: C: cropped and incomplete "genus" stacked barplot generated with R
5.2 years ago by dpc ▴ 250
0
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1
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1.6k
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Comment: C: cropped and incomplete "genus" stacked barplot generated with R
5.2 years ago by dpc ▴ 250
0
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1
reply
2.7k
views
Answer: A: Heatmap of mothur output with Phyloseq
5.2 years ago by dpc ▴ 250
0
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5
replies
1.6k
views
cropped and incomplete "genus" stacked barplot generated with R
mothur 16s R software error phyloseq
5.2 years ago by dpc ▴ 250
0
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0
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2.7k
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Comment: C: ERROR:Error in x[seq_len(n)] : object of type 'S4' is not subsettable
5.3 years ago by dpc ▴ 250
0
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2
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2.7k
views
ERROR:Error in x[seq_len(n)] : object of type 'S4' is not subsettable
heatmap phyloseq mothur 16s-rRNA
updated 2.6 years ago by 45k • written 5.3 years ago by ▴ 250
0
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1
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2.7k
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Comment: C: Heatmap of mothur output with Phyloseq
5.3 years ago by dpc ▴ 250
0
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0
replies
888
views
Cut off for dist.seqs step in MOTHUR
mothur 16s metagenomics
5.3 years ago by dpc ▴ 250
0
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1
reply
1.6k
views
Comment: C: Mock community in MOTHUR
5.3 years ago by dpc ▴ 250
0
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3
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1.6k
views
Mock community in MOTHUR
mothur 16s metagenomics
updated 3.4 years ago by • 0 • written 5.3 years ago by ▴ 250
0
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0
replies
1.2k
views
Comment: C: Mothur software analysis
5.3 years ago by dpc ▴ 250
0
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1
reply
1.2k
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Comment: C: Mothur software analysis
5.3 years ago by dpc ▴ 250
0
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5
replies
1.2k
views
Mothur software analysis
mothur 16s metagenome gut
updated 5.3 years ago by 10k • written 5.3 years ago by ▴ 250
0
votes
1
reply
851
views
Can I analyse single-ended WGS data with average readlength 35 bp by MetPhlAn?
metaphlan wgs bowtie readlength metagenomics
5.3 years ago by dpc ▴ 250
0
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1
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2.8k
views
Comment: C: FASTQC result FAILED in adapter content and k-mer section!!!
5.3 years ago by dpc ▴ 250
1
vote
4
replies
2.8k
views
FASTQC result FAILED in adapter content and k-mer section!!!
wgs fastqc quality control
5.3 years ago by dpc ▴ 250
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