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cell deconvolution tool Kassandra
cell deconvolution RNAseq Kassandra TPM
updated 3 months ago by 87k • written 3 months ago by ▴ 120
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1.5k
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Comment: Comment: analysing bismark.cov.gz files
21 months ago by adR ▴ 120
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2
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1.5k
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analysing bismark.cov.gz files
R methylation bismark
21 months ago by adR ▴ 120
1
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1
reply
785
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DESeq2. Multi-factor Interactions designs
RNA-Seq mikelove DESeq2
updated 2.5 years ago by ▴ 810 • written 2.5 years ago by ▴ 120
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883
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Comment: Comment: node rewiring analysis using DyNet app in the Cytoscape
2.5 years ago by adR ▴ 120
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2
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883
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node rewiring analysis using DyNet app in the Cytoscape
Cytoscape DyNet
2.5 years ago by adR ▴ 120
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0
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472
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Detecting Rewiring Events in Protein-Protein Interaction
interaction DyNet network biology protein
2.6 years ago by adR ▴ 120
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0
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722
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Comment: Comment: Is ATAC-seq libraries consider as reduced representation libraries ?
2.9 years ago by adR ▴ 120
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2
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722
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Is ATAC-seq libraries consider as reduced representation libraries ?
ATAC-Seq Bismark
2.9 years ago by adR ▴ 120
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0
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821
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Comment: Comment: how to handle duplicate reads in unpaired Whole Exome Sequence
2.9 years ago by adR ▴ 120
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2
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821
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how to handle duplicate reads in unpaired Whole Exome Sequence
SAMtools PCR Picard
updated 21 months ago by 45k • written 3.0 years ago by ▴ 120
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0
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2.3k
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Comment: Comment: how to get legends labels for multiqc plots
3.0 years ago by adR ▴ 120
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1
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2.3k
views
Comment: Comment: how to get legends labels for multiqc plots
3.0 years ago by adR ▴ 120
6
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11
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2.3k
views
how to get legends labels for multiqc plots
multiQC
3.0 years ago by adR ▴ 120
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0
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2.3k
views
Comment: Comment: how to get legends labels for multiqc plots
3.0 years ago by adR ▴ 120
0
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2
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2.3k
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Comment: Comment: how to get legends labels for multiqc plots
3.0 years ago by adR ▴ 120
0
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0
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917
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Comment: Comment: whole exome sequence fragment size analysis
3.0 years ago by adR ▴ 120
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1
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917
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Comment: Comment: whole exome sequence fragment size analysis
3.0 years ago by adR ▴ 120
1
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4
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917
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whole exome sequence fragment size analysis
deepTools bamPEFragmentSize
3.0 years ago by adR ▴ 120
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1
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1.2k
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Comment: Comment: human genome files
3.0 years ago by adR ▴ 120
2
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4
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1.2k
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human genome files
alignment featureCounts
updated 3.0 years ago by 150k • written 3.0 years ago by ▴ 120
0
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1
reply
627
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pipeline for methylation data analysis
ATAC-seq methyl-ATAC-seq methylation DNA
updated 3.1 years ago by ▴ 250 • written 3.1 years ago by ▴ 120
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0
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452
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how to add more filter option on the gene ontology(GO) annotation
class gene ontology GO annotation
3.1 years ago by adR ▴ 120
2
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3
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2.3k
views
computeMatrix in deeptool is Running with no result
deepTools bamCoverage computeMatrix
updated 3.3 years ago by ▴ 30 • written 3.3 years ago by ▴ 120
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0
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2.3k
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Comment: Comment: computeMatrix in deeptool is Running with no result
3.3 years ago by adR ▴ 120
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1
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2.9k
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Comment: Comment: Deeptools: computeMatrix can't read file
3.3 years ago by adR ▴ 120
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1
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2.9k
views
Comment: Comment: Deeptools: computeMatrix can't read file
3.3 years ago by adR ▴ 120
2
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2
replies
1.1k
views
multiBamSummary for unpaired end read?
multiBamSummary bamCoverage deepTools
updated 3.3 years ago by 150k • written 3.3 years ago by ▴ 120
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1
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5.2k
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Comment: Comment: multiqc could not generate results
3.3 years ago by adR ▴ 120
3
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6
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5.2k
views
multiqc could not generate results
multiQC
updated 3.3 years ago by ★ 1.4k • written 3.3 years ago by ▴ 120
2
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3
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1.0k
views
how to do basic statistics for bam files
picard GATK alignment
updated 3.3 years ago by 7.3k • written 3.3 years ago by ▴ 120
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1
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8.4k
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Comment: Comment: how to install picard and GATK
3.3 years ago by adR ▴ 120
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1
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8.4k
views
Comment: Comment: how to install picard and GATK
3.3 years ago by adR ▴ 120
1
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5
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8.4k
views
how to install picard and GATK
picard GATK
updated 3.3 years ago by 165k • written 3.3 years ago by ▴ 120
1
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1
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1.0k
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feutureCount in the subread
fe subread
3.4 years ago by adR ▴ 120
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1
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1.5k
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Comment: Comment: counting EXOM reads using subread featureCounts
3.4 years ago by adR ▴ 120
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1
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1.5k
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Comment: Comment: counting EXOM reads using subread featureCounts
3.4 years ago by adR ▴ 120
1
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6
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1.5k
views
counting EXOM reads using subread featureCounts
featureCounts subread exom
updated 2.8 years ago by 45k • written 3.4 years ago by ▴ 120
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1
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1.2k
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Comment: Comment: alignment using bowtie2
3.4 years ago by adR ▴ 120
2
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3
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1.2k
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alignment using bowtie2
bowtie2 sequencing alignment
updated 3.4 years ago by 9.0k • written 3.4 years ago by ▴ 120
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1
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1.1k
views
Comment: Comment: Differentail expression analysis between 3 groups
3.4 years ago by adR ▴ 120
1
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3
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1.1k
views
Differentail expression analysis between 3 groups
RNA-Seq DESeq2 limma DEA
updated 3.4 years ago by ★ 2.0k • written 3.4 years ago by ▴ 120
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0
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423
views
Circulating Cell-Free DNA
Bioconductor R sequencing
3.5 years ago by adR ▴ 120
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0
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944
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Comment: Comment: how to produce plot below using R
3.7 years ago by adR ▴ 120
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2
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944
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how to produce plot below using R
RNA-Seq plot circus
3.7 years ago by adR ▴ 120
0
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1
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551
views
gene calssfication based on on their chemical nature
RNA-Seq SingleCellSignalR
updated 3.7 years ago by ★ 1.6k • written 3.7 years ago by ▴ 120
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0
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549
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circusplot:-adding additional layer or track to indicate additional futures
r
3.7 years ago by adR ▴ 120
0
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1
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707
views
Inter-tissue coexpression network analysis
correlation bipartite clustring coexpression
4.0 years ago by adR ▴ 120
2
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4
replies
3.8k
views
how to make correlation heatmap
heatmaps correlation
updated 4.0 years ago by ▴ 190 • written 4.0 years ago by ▴ 120
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0
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638
views
possiblity of using SingleCellSignalR for bulk RNAseq data
RNA-Seq SingleCellSignalR
4.1 years ago by adR ▴ 120
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