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cell deconvolution tool Kassandra
cell deconvolution RNAseq Kassandra TPM
updated 9 months ago by 89k • written 9 months ago by ▴ 130
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1.7k
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Comment: Comment: analysing bismark.cov.gz files
2.2 years ago by adR ▴ 130
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2
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1.7k
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analysing bismark.cov.gz files
R methylation bismark
2.2 years ago by adR ▴ 130
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1
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881
views
DESeq2. Multi-factor Interactions designs
RNA-Seq mikelove DESeq2
updated 3.0 years ago by ▴ 810 • written 3.0 years ago by ▴ 130
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1.1k
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Comment: Comment: node rewiring analysis using DyNet app in the Cytoscape
3.0 years ago by adR ▴ 130
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2
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1.1k
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node rewiring analysis using DyNet app in the Cytoscape
Cytoscape DyNet
3.0 years ago by adR ▴ 130
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0
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567
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Detecting Rewiring Events in Protein-Protein Interaction
interaction DyNet network biology protein
3.1 years ago by adR ▴ 130
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842
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Comment: Comment: Is ATAC-seq libraries consider as reduced representation libraries ?
3.4 years ago by adR ▴ 130
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2
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842
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Is ATAC-seq libraries consider as reduced representation libraries ?
ATAC-Seq Bismark
3.4 years ago by adR ▴ 130
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0
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996
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Comment: Comment: how to handle duplicate reads in unpaired Whole Exome Sequence
3.4 years ago by adR ▴ 130
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2
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996
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how to handle duplicate reads in unpaired Whole Exome Sequence
SAMtools PCR Picard
updated 2.3 years ago by 45k • written 3.5 years ago by ▴ 130
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0
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2.8k
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Comment: Comment: how to get legends labels for multiqc plots
3.5 years ago by adR ▴ 130
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1
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2.8k
views
Comment: Comment: how to get legends labels for multiqc plots
3.5 years ago by adR ▴ 130
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11
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2.8k
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how to get legends labels for multiqc plots
multiQC
3.5 years ago by adR ▴ 130
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0
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2.8k
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Comment: Comment: how to get legends labels for multiqc plots
3.5 years ago by adR ▴ 130
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2
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2.8k
views
Comment: Comment: how to get legends labels for multiqc plots
3.5 years ago by adR ▴ 130
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0
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1.1k
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Comment: Comment: whole exome sequence fragment size analysis
3.5 years ago by adR ▴ 130
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1
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1.1k
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Comment: Comment: whole exome sequence fragment size analysis
3.5 years ago by adR ▴ 130
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4
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1.1k
views
whole exome sequence fragment size analysis
deepTools bamPEFragmentSize
3.5 years ago by adR ▴ 130
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1
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1.4k
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Comment: Comment: human genome files
3.5 years ago by adR ▴ 130
2
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4
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1.4k
views
human genome files
alignment featureCounts
updated 3.5 years ago by 153k • written 3.5 years ago by ▴ 130
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1
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734
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pipeline for methylation data analysis
ATAC-seq methyl-ATAC-seq methylation DNA
updated 3.5 years ago by ▴ 260 • written 3.5 years ago by ▴ 130
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0
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516
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how to add more filter option on the gene ontology(GO) annotation
class gene ontology GO annotation
3.5 years ago by adR ▴ 130
2
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3
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2.6k
views
computeMatrix in deeptool is Running with no result
deepTools bamCoverage computeMatrix
updated 3.8 years ago by ▴ 30 • written 3.8 years ago by ▴ 130
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0
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2.6k
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Comment: Comment: computeMatrix in deeptool is Running with no result
3.8 years ago by adR ▴ 130
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1
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3.3k
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Comment: Comment: Deeptools: computeMatrix can't read file
3.8 years ago by adR ▴ 130
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1
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3.3k
views
Comment: Comment: Deeptools: computeMatrix can't read file
3.8 years ago by adR ▴ 130
2
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2
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1.4k
views
multiBamSummary for unpaired end read?
multiBamSummary bamCoverage deepTools
updated 3.8 years ago by 153k • written 3.8 years ago by ▴ 130
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1
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5.9k
views
Comment: Comment: multiqc could not generate results
3.8 years ago by adR ▴ 130
3
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6
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5.9k
views
multiqc could not generate results
multiQC
updated 3.8 years ago by ★ 1.5k • written 3.8 years ago by ▴ 130
2
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3
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1.3k
views
how to do basic statistics for bam files
picard GATK alignment
updated 3.8 years ago by 7.9k • written 3.8 years ago by ▴ 130
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1
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9.0k
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Comment: Comment: how to install picard and GATK
3.8 years ago by adR ▴ 130
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1
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9.0k
views
Comment: Comment: how to install picard and GATK
3.8 years ago by adR ▴ 130
1
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5
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9.0k
views
how to install picard and GATK
picard GATK
updated 3.8 years ago by 166k • written 3.8 years ago by ▴ 130
1
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1
reply
1.1k
views
feutureCount in the subread
fe subread
3.8 years ago by adR ▴ 130
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1
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1.8k
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Comment: Comment: counting EXOM reads using subread featureCounts
3.8 years ago by adR ▴ 130
0
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1
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1.8k
views
Comment: Comment: counting EXOM reads using subread featureCounts
3.8 years ago by adR ▴ 130
1
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6
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1.8k
views
counting EXOM reads using subread featureCounts
featureCounts subread exom
updated 3.3 years ago by 45k • written 3.8 years ago by ▴ 130
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1
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1.4k
views
Comment: Comment: alignment using bowtie2
3.8 years ago by adR ▴ 130
2
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3
replies
1.4k
views
alignment using bowtie2
bowtie2 sequencing alignment
updated 3.8 years ago by 9.0k • written 3.8 years ago by ▴ 130
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1
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1.3k
views
Comment: Comment: Differentail expression analysis between 3 groups
3.9 years ago by adR ▴ 130
1
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3
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1.3k
views
Differentail expression analysis between 3 groups
RNA-Seq DESeq2 limma DEA
updated 3.9 years ago by ★ 2.1k • written 3.9 years ago by ▴ 130
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0
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480
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Circulating Cell-Free DNA
Bioconductor R sequencing
3.9 years ago by adR ▴ 130
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0
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1.1k
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Comment: Comment: how to produce plot below using R
4.2 years ago by adR ▴ 130
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2
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1.1k
views
how to produce plot below using R
RNA-Seq plot circus
4.2 years ago by adR ▴ 130
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1
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637
views
gene calssfication based on on their chemical nature
RNA-Seq SingleCellSignalR
updated 4.2 years ago by ★ 1.7k • written 4.2 years ago by ▴ 130
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0
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648
views
circusplot:-adding additional layer or track to indicate additional futures
r
4.2 years ago by adR ▴ 130
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1
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784
views
Inter-tissue coexpression network analysis
correlation bipartite clustring coexpression
4.5 years ago by adR ▴ 130
2
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4
replies
4.4k
views
how to make correlation heatmap
heatmaps correlation
updated 4.5 years ago by ▴ 190 • written 4.5 years ago by ▴ 130
0
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0
replies
689
views
possiblity of using SingleCellSignalR for bulk RNAseq data
RNA-Seq SingleCellSignalR
4.5 years ago by adR ▴ 130
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