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3
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3
replies
1.1k
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How to determine n and c terminal nucleotide bases from fasta sequences via R or bash scripting?
terminal FASTA N C
updated 9 months ago by ★ 30k • written 9 months ago by ▴ 60
1
vote
5
replies
1.2k
views
How can I plot a step graph in R?
recurrence Step-graph Survival
updated 10 months ago by 154k • written 10 months ago by ▴ 60
0
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1
reply
1.2k
views
Comment: Comment: How can I plot a step graph in R?
10 months ago by prithvi.mastermind ▴ 60
0
votes
1
reply
1.2k
views
Comment: Comment: How can I plot a step graph in R?
updated 10 months ago by 6.5k • written 10 months ago by ▴ 60
0
votes
0
replies
401
views
NA values showing at duplicacy removal step
Microarray RNA-Seq
18 months ago by prithvi.mastermind ▴ 60
0
votes
0
replies
645
views
How to match identifier to identifier in order to make a relationship in neo4j?
R neo4j pathway
21 months ago by prithvi.mastermind ▴ 60
0
votes
0
replies
453
views
How can I pass multiple GO-BP terms in neo4j to make a network with a single subtype?
R neo4j pathway
21 months ago by prithvi.mastermind ▴ 60
0
votes
2
replies
2.0k
views
How to run Aracne cytoscape plugin ?
R rna-seq cytoscape
updated 21 months ago by ▴ 310 • written 5.0 years ago by ▴ 60
0
votes
1
reply
989
views
How to interpret LASSO results for creating gene signature ?
Microarray KM OS plot
updated 2.3 years ago by • 0 • written 2.5 years ago by ▴ 60
1
vote
1
reply
1.2k
views
Error while running survival analysis ?
KM OS plot RNA-Seq
updated 2.6 years ago by ▴ 370 • written 2.6 years ago by ▴ 60
12
votes
6
replies
1.6k
views
6 follow
What does PCA results signify?
RNA-Seq PCA
updated 2.9 years ago by 15k • written 2.9 years ago by ▴ 60
0
votes
1
reply
730
views
Why do I get lines of 2 different colors in the mfuzz clustering analysis?
clustering RNA-Seq
updated 2.9 years ago by ★ 2.1k • written 2.9 years ago by ▴ 60
0
votes
0
replies
2.2k
views
Comment: Comment: Memory allocation code while running Seurat ?
2.9 years ago by prithvi.mastermind ▴ 60
0
votes
2
replies
2.2k
views
Memory allocation code while running Seurat ?
Single cell analysis
updated 2.9 years ago by ★ 1.9k • written 2.9 years ago by ▴ 60
0
votes
1
reply
1.2k
views
Comment: Comment: How to control width of my boxplots?
2.9 years ago by prithvi.mastermind ▴ 60
2
votes
3
replies
1.2k
views
How to control width of my boxplots?
RNA-Seq Boxplot
updated 2.9 years ago by 45k • written 2.9 years ago by ▴ 60
0
votes
1
reply
1.1k
views
How to interpret KM graph?
KM OS plot RNA-Seq
updated 2.9 years ago by 27k • written 2.9 years ago by ▴ 60
0
votes
0
replies
484
views
Is the use of 1.96 as a threshold suitable for KM analysis?
RNA-Seq Survival
2.9 years ago by prithvi.mastermind ▴ 60
0
votes
0
replies
554
views
Why I'm not getting KM plots at a significant p-value?
KM OS plot RNA-Seq
2.9 years ago by prithvi.mastermind ▴ 60
0
votes
1
reply
1.4k
views
How to choose value of m and c in mfuzz ?
clustering RNA-Seq Normalization soft
updated 2.9 years ago by 6.2k • written 2.9 years ago by ▴ 60
0
votes
0
replies
1.9k
views
Comment: Comment: How to apply two tailed paired t-test in limma for DEGs selection?
3.0 years ago by prithvi.mastermind ▴ 60
1
vote
6
replies
2.2k
views
6 follow
How to perform paired t-test in R for obtaining p-value of each gene?
p-value RNA-Seq z-score t-test
updated 2.8 years ago by 45k • written 3.0 years ago by ▴ 60
1
vote
5
replies
1.9k
views
How to apply two tailed paired t-test in limma for DEGs selection?
Limma Design paired matrix Microarray t-test
3.0 years ago by prithvi.mastermind ▴ 60
0
votes
1
reply
2.2k
views
Comment: Comment: How to perform paired t-test in R for obtaining p-value of each gene?
3.0 years ago by prithvi.mastermind ▴ 60
0
votes
1
reply
2.1k
views
Comment: Comment: Why I get error while performing DeSeq2 ?
3.0 years ago by prithvi.mastermind ▴ 60
2
votes
6
replies
2.1k
views
Why I get error while performing DeSeq2 ?
DeSeq2 RNA-Seq Normalization
updated 3.0 years ago by 15k • written 3.0 years ago by ▴ 60
0
votes
1
reply
2.1k
views
Comment: Comment: Why I get error while performing DeSeq2 ?
3.0 years ago by prithvi.mastermind ▴ 60
0
votes
1
reply
964
views
Error while running Limma
Microarray Limma Design matrix
updated 3.0 years ago by ★ 1.9k • written 3.0 years ago by ▴ 60
0
votes
0
replies
1.3k
views
Comment: Comment: What is the best way to pre-process RNA-Seq data?
3.0 years ago by prithvi.mastermind ▴ 60
1
vote
3
replies
1.3k
views
What is the best way to pre-process RNA-Seq data?
RNA-Seq z-score Normalization
updated 3.0 years ago by 45k • written 3.0 years ago by ▴ 60
0
votes
1
reply
671
views
At what step should I perform batch correction?
Batch-effect Microarray RNA-Seq
updated 14 months ago by 45k • written 3.1 years ago by ▴ 60
0
votes
0
replies
504
views
How can I amalgamate both co-expression and survival data to find highly co-expressed modules ?
hazard cox R module co-expression propotional
3.5 years ago by prithvi.mastermind ▴ 60
0
votes
1
reply
955
views
How many minimum number of samples are allowed for DEGs identication in microarray dataset?
Limma DEGs Microarray
updated 3.9 years ago by ★ 1.7k • written 3.9 years ago by ▴ 60
5
votes
5
replies
3.5k
views
How to draw a Sankey plot with colored links?
R software error
updated 3.9 years ago by ▴ 60 • written 4.8 years ago by ▴ 60
0
votes
0
replies
876
views
How to use pamr function in R?
R software error
updated 4.7 years ago by 45k • written 4.8 years ago by ▴ 60
1
vote
2
replies
1.6k
views
How to map Affymetrix IDs to Gene Symbols using hgu133a.db R package?
R software error
updated 4.2 years ago by ▴ 20 • written 4.8 years ago by ▴ 60
1
vote
4
replies
2.0k
views
How to increase font size in Funnel plot labels?
R software error
updated 4.8 years ago by ★ 2.9k • written 4.8 years ago by ▴ 60
0
votes
0
replies
2.0k
views
Comment: C: How to increase font size in Funnel plot labels?
4.8 years ago by prithvi.mastermind ▴ 60
0
votes
1
reply
1.6k
views
Comment: C: How to draw a funnel plot in R using Plot_ly function?
4.8 years ago by prithvi.mastermind ▴ 60
0
votes
0
replies
3.5k
views
Comment: C: How to draw a Sankey plot with colored links?
4.8 years ago by prithvi.mastermind ▴ 60
1
vote
3
replies
1.6k
views
How to draw a funnel plot in R using Plot_ly function?
R software error
updated 4.8 years ago by ★ 2.9k • written 4.8 years ago by ▴ 60
1
vote
2
replies
3.5k
views
Comment: C: How to draw a Sankey plot with colored links?
4.8 years ago by prithvi.mastermind ▴ 60
0
votes
0
replies
746
views
Pathifier Results not fully reproducible across TCGA and METABRIC
R software error rna-seq
4.9 years ago by prithvi.mastermind ▴ 60
0
votes
0
replies
682
views
Training and Testing datasets classification?
R gene software error
updated 5.1 years ago by 20 • written 5.2 years ago by ▴ 60
0
votes
1
reply
1.2k
views
UCSC Xena Probe to Gene mapping
RNA-Seq gene software error R next-gen
updated 5.1 years ago by 20 • written 5.2 years ago by ▴ 60
1
vote
2
replies
2.1k
views
How to Normalize and log tranform the miRNA Seq data using DeSeQ2 / EdgeR?
R rna-seq software error
updated 5.2 years ago by ★ 8.3k • written 5.2 years ago by ▴ 60
0
votes
1
reply
4.8k
views
Comment: C: How to compute Spearman correlation between numeric and non-numeric data variabl
5.2 years ago by prithvi.mastermind ▴ 60
0
votes
4
replies
4.8k
views
How to compute Spearman correlation between numeric and non-numeric data variables ?
R genome gene
updated 5.2 years ago by ★ 7.7k • written 5.2 years ago by ▴ 60
2
votes
2
replies
1.8k
views
How to calculate Spearman correlation coefficient and p-values between numeric and non-numeric data variables?
R software error gene
updated 5.2 years ago by 45k • written 5.2 years ago by ▴ 60
1
vote
2
replies
1.9k
views
Ensembl ID mapping using Biomart
RNA-Seq R software error gene
updated 5.2 years ago by 27k • written 5.2 years ago by ▴ 60
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