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how to import hdf5 Hi-C data into R using HiTC package
hdf5 importC R HiTC
updated 20 minutes ago by 11k • written 1 hour ago by ▴ 140
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152
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how to look at interaction between SNP and gene
interacting Hi-C loop SNP Gene
1 day ago by rheab1230 ▴ 140
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115
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how to get genomic range for hi-c datasets in hdf5 file
R hi-c contact-map genomic-ranges
updated 2 days ago by 38k • written 3 days ago by ▴ 140
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103
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how to interpret hi-c heatmap hdf5 file
heatmap maps hdf5 hi-c
3 days ago by rheab1230 ▴ 140
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0
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96
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inquiry related to Hi-C data download
Hi-C datasets human brain-cortex interaction matrix
3 days ago by rheab1230 ▴ 140
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0
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478
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Comment: Comment: how to create interacting Hi-C peaks
3 days ago by rheab1230 ▴ 140
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0
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478
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Comment: Comment: how to create interacting Hi-C peaks
3 days ago by rheab1230 ▴ 140
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4
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478
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how to create interacting Hi-C peaks
chromatin interaction gene Hi-C
3 days ago by rheab1230 ▴ 140
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0
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197
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How to find association between a gene-rsid and AD
association Loci LD AD
9 days ago by rheab1230 ▴ 140
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0
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150
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inquiry related to same SNP for a gene across for two tissues
snp relation tissue genetics gene
9 days ago by rheab1230 ▴ 140
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123
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chia-pet tutorial
snp gene chia-pet
10 days ago by rheab1230 ▴ 140
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0
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286
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Comment: Comment: how to use make.names commnad in r while using rbind function
16 days ago by rheab1230 ▴ 140
3
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3
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286
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how to use make.names commnad in r while using rbind function
R
16 days ago by rheab1230 ▴ 140
1
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1
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201
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error while submitting a Rscript job through slurm
slurm R
updated 4 weeks ago by 38k • written 4 weeks ago by ▴ 140
1
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0
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241
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Comment: Comment: installation of bioclite gives an error
6 weeks ago by rheab1230 ▴ 140
4
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2
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241
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installation of bioclite gives an error
Biocmanager bioconductor bioclite error R
6 weeks ago by rheab1230 ▴ 140
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0
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289
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Comment: Comment: difference between chip-seq and association study
6 weeks ago by rheab1230 ▴ 140
2
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2
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289
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difference between chip-seq and association study
association chip-seq TWAS
6 weeks ago by rheab1230 ▴ 140
0
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0
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209
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comparison of gene models across tissues
elastinet TWAS models association
9 weeks ago by rheab1230 ▴ 140
0
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1
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439
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Comment: Comment: gwas summary statistics
9 weeks ago by rheab1230 ▴ 140
0
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3
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439
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gwas summary statistics
AD gwas summary-statistics predixcan
updated 9 weeks ago by 21k • written 9 weeks ago by ▴ 140
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0
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284
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Comment: Comment: genes associated with AD list
9 weeks ago by rheab1230 ▴ 140
3
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2
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284
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genes associated with AD list
snp variants alzheimer association genes
9 weeks ago by rheab1230 ▴ 140
0
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1
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204
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trans eqtl study for TWAS
twas eqtl GWAS bayesian
updated 17 days ago by ★ 3.0k • written 9 weeks ago by ▴ 140
5
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2
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532
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how to loop through various dataframes in R
dataframe R
updated 11 weeks ago by 11k • written 12 weeks ago by ▴ 140
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0
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280
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Comment: Comment: Inquiry related to processing multiple db file simulataneously
3 months ago by rheab1230 ▴ 140
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2
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280
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Inquiry related to processing multiple db file simulataneously
sql R
updated 5 days ago by 38k • written 3 months ago by ▴ 140
5
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11
replies
2.3k
views
plotting AF in vcf files
AF vcf plotting
updated 4 months ago by ▴ 230 • written 19 months ago by ▴ 140
5
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2
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406
views
Learning Linux advance commands
grep awk linux sed
updated 5 months ago by 11k • written 5 months ago by ▴ 140
0
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1
reply
631
views
Enhancer region
Chip-seq enhancer
updated 5 months ago by ▴ 20 • written 23 months ago by ▴ 140
0
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0
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277
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Comment: Comment: develop model file after segregating vcf data into different ethnicity subgroup
5 months ago by rheab1230 ▴ 140
0
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2
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277
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develop model file after segregating vcf data into different ethnicity subgroup
model machine vcf learning ethnicity
5 months ago by rheab1230 ▴ 140
0
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342
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Comment: Comment: inverse normal transformation for gtex data
5 months ago by rheab1230 ▴ 140
3
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3
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342
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inverse normal transformation for gtex data
INT normalization gtex R
updated 4 months ago by ▴ 200 • written 5 months ago by ▴ 140
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0
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176
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different sample IDs between vcf and gtex gene count file
sample vcf IDs gene gtex count
5 months ago by rheab1230 ▴ 140
0
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0
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187
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Comment: Comment: filtering samples before normalization step
5 months ago by rheab1230 ▴ 140
0
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1
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187
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filtering samples before normalization step
TMM depth gtex normalization sequencing
5 months ago by rheab1230 ▴ 140
0
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0
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318
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Comment: Comment: edgeR normalization
6 months ago by rheab1230 ▴ 140
0
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1
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318
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edgeR normalization
TMM normalization edgeR read_counts
6 months ago by rheab1230 ▴ 140
0
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3
replies
464
views
how to calculate %of missing genotype in vcf file
vcf imputation michigan genotype
updated 6 months ago by ★ 5.2k • written 6 months ago by ▴ 140
0
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1
reply
380
views
extract DS field from a genotype file
vcf bcftools genotype dosage
updated 3 days ago by 38k • written 6 months ago by ▴ 140
0
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0
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526
views
Comment: Comment: difference between different field info in vcf file format
6 months ago by rheab1230 ▴ 140
4
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3
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526
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difference between different field info in vcf file format
format GT vcf filr DS
6 months ago by rheab1230 ▴ 140
0
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0
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252
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Inquiry related to inverse quantile normalization
gtex normalization qtl genecount
7 months ago by rheab1230 ▴ 140
0
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0
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195
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inquiry related to gtex normalization
gene GTEX expression tissue normalization brain
7 months ago by rheab1230 ▴ 140
5
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1
reply
317
views
How can I download SNPs from HapMap European populations?
snp annotation gtex
updated 7 months ago by 2.6k • written 7 months ago by ▴ 140
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244
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inquiry related to gtex normalization
gtex normalization gene count
7 months ago by rheab1230 ▴ 140
0
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0
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435
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Comment: Comment: convert .bed format to .txt format
7 months ago by rheab1230 ▴ 140
3
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2
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435
views
convert .bed format to .txt format
gene expression bed count
7 months ago by rheab1230 ▴ 140
0
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1
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594
views
Comment: Comment: deseq2 normalization for Gtex datasets
7 months ago by rheab1230 ▴ 140
204 results • Page 1 of 5
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