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Comment: Comment: how to measure significance of improvement between two methods during modeling
17 months ago by rheab1230 ▴ 150
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3
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993
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how to measure significance of improvement between two methods during modeling
spearman correlation
updated 17 months ago by 27k • written 17 months ago by ▴ 150
0
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4
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1.4k
views
how to find genes that are significantly expressed in brain cortex samples
rna-seq gene-expression
updated 19 months ago by 90k • written 19 months ago by ▴ 150
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1
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1.4k
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Comment: Comment: how to find genes that are significantly expressed in brain cortex samples
19 months ago by rheab1230 ▴ 150
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0
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515
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beta coefficient improves after doing mediation analysis
coefficient mediation beta regression
20 months ago by rheab1230 ▴ 150
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0
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2.7k
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Comment: Comment: Manhattan plot for TWAS results
21 months ago by rheab1230 ▴ 150
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4
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2.7k
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Manhattan plot for TWAS results
TWAS GWAS manhattan-plot
21 months ago by rheab1230 ▴ 150
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1.0k
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Comment: Comment: How to show that correlation from one method is more significant than other meth
22 months ago by rheab1230 ▴ 150
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3
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1.0k
views
How to show that correlation from one method is more significant than other method?
p-value model-performance significance correlation
updated 22 months ago by ★ 1.6k • written 22 months ago by ▴ 150
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1
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1.6k
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Comment: Comment: how to convert beta effect size of SNP to a statistical value to be compared acr
2.1 years ago by rheab1230 ▴ 150
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1
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1.6k
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Comment: Comment: how to convert beta effect size of SNP to a statistical value to be compared acr
2.1 years ago by rheab1230 ▴ 150
1
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5
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1.6k
views
how to convert beta effect size of SNP to a statistical value to be compared across tissues
beta-effect statistics SNP multi-variate
updated 2.1 years ago by 5.2k • written 2.1 years ago by ▴ 150
0
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2
replies
1.1k
views
how to evaluate SNPs that are regulating same gene expression across multiple tissues
snp GTEx
updated 2.2 years ago by 5.2k • written 2.2 years ago by ▴ 150
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4
replies
1.8k
views
error while installing peertools
peertools
updated 2.3 years ago by ★ 30k • written 4.0 years ago by ▴ 150
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0
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607
views
snps being shared by gene in different tissues
mechanism shared colocalization snp tissues
2.4 years ago by rheab1230 ▴ 150
0
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0
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492
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how to calculate predicted expression using weights from model file
predicted-expression R predixcan
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 150
0
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0
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874
views
How to testing of cv.glmnet model on the entire dataset rather than just training
cross-validation testing glmnet model
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 150
0
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1
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1.9k
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Comment: Comment: rank SNPs after elastic net modeling
2.4 years ago by rheab1230 ▴ 150
0
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1
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1.9k
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Comment: Comment: rank SNPs after elastic net modeling
2.4 years ago by rheab1230 ▴ 150
1
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5
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1.9k
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rank SNPs after elastic net modeling
SNPs R elastic-net modeling
updated 2.4 years ago by ★ 1.6k • written 2.4 years ago by ▴ 150
0
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0
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618
views
how to plot heatmap in r for all the gene across tissues to see distribution of snps
snp R heatmap
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 150
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0
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2.4k
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Comment: Comment: calculate p value and associated z score for snp-gene pair
2.5 years ago by rheab1230 ▴ 150
0
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1
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2.4k
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Comment: Comment: calculate p value and associated z score for snp-gene pair
2.5 years ago by rheab1230 ▴ 150
0
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1
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2.4k
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Comment: Comment: calculate p value and associated z score for snp-gene pair
2.5 years ago by rheab1230 ▴ 150
4
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6
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2.4k
views
calculate p value and associated z score for snp-gene pair
snp association gene pvalue
2.5 years ago by rheab1230 ▴ 150
0
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0
replies
1.2k
views
Comment: Comment: how to look for interactions between different chromosomes
2.5 years ago by rheab1230 ▴ 150
1
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2
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1.2k
views
how to look for interactions between different chromosomes
SNP interactions Gene HiC
2.5 years ago by rheab1230 ▴ 150
0
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1
reply
2.0k
views
how to input bedpe file in IGV
IGV interaction input bedpe
updated 2.5 years ago by 166k • written 2.5 years ago by ▴ 150
0
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1
reply
1.1k
views
how to look at interacting SNP for a gene using Hic contact map
peak interaction contact-map Hi-C
updated 2.6 years ago by ▴ 100 • written 2.6 years ago by ▴ 150
0
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0
replies
636
views
how to calculate minor allele frequency for each snp across samples
maf snp genotype
2.6 years ago by rheab1230 ▴ 150
0
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0
replies
1.2k
views
Comment: Comment: how to look at interaction between SNP and gene
2.7 years ago by rheab1230 ▴ 150
0
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0
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630
views
how to plot distribution of SNPs across a set of genes based on distance between snp and gene
snp genes
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 150
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2
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1.2k
views
how to look at interaction between SNP and gene
SNP Gene Hi-C
2.7 years ago by rheab1230 ▴ 150
0
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1
reply
853
views
how to import hdf5 Hi-C data into R using HiTC package
hdf5 importC R HiTC
updated 2.7 years ago by 13k • written 2.7 years ago by ▴ 150
0
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0
replies
684
views
how to get genomic range for hi-c datasets in hdf5 file
R hi-c contact-map genomic-ranges
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 150
0
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0
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616
views
how to interpret hi-c heatmap hdf5 file
heatmap maps hdf5 hi-c
2.7 years ago by rheab1230 ▴ 150
0
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0
replies
713
views
inquiry related to Hi-C data download
Hi-C datasets human brain-cortex interaction matrix
2.7 years ago by rheab1230 ▴ 150
0
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0
replies
1.8k
views
Comment: Comment: how to create interacting Hi-C peaks
2.7 years ago by rheab1230 ▴ 150
0
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0
replies
1.8k
views
Comment: Comment: how to create interacting Hi-C peaks
2.7 years ago by rheab1230 ▴ 150
0
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4
replies
1.8k
views
how to create interacting Hi-C peaks
chromatin interaction gene Hi-C
2.7 years ago by rheab1230 ▴ 150
0
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0
replies
810
views
How to find association between a gene-rsid and AD
association Loci LD AD
2.7 years ago by rheab1230 ▴ 150
0
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0
replies
627
views
inquiry related to same SNP for a gene across for two tissues
snp relation tissue genetics gene
2.7 years ago by rheab1230 ▴ 150
0
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0
replies
504
views
chia-pet tutorial
snp gene chia-pet
2.7 years ago by rheab1230 ▴ 150
0
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0
replies
3.7k
views
Comment: Comment: how to use make.names commnad in r while using rbind function
2.7 years ago by rheab1230 ▴ 150
3
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3
replies
3.7k
views
how to use make.names commnad in r while using rbind function
R
2.7 years ago by rheab1230 ▴ 150
1
vote
1
reply
930
views
error while submitting a Rscript job through slurm
slurm R
updated 2.8 years ago by 45k • written 2.8 years ago by ▴ 150
1
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0
replies
1.4k
views
Comment: Comment: installation of bioclite gives an error
2.8 years ago by rheab1230 ▴ 150
4
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2
replies
1.4k
views
installation of bioclite gives an error
R bioclite bioconductor Biocmanager
updated 2.6 years ago by 45k • written 2.8 years ago by ▴ 150
0
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0
replies
1.1k
views
Comment: Comment: difference between chip-seq and association study
2.8 years ago by rheab1230 ▴ 150
2
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2
replies
1.1k
views
difference between chip-seq and association study
association chip-seq TWAS
2.8 years ago by rheab1230 ▴ 150
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