Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
7
votes
8
replies
540
views
Create Conda Environment with YAML File
Python
updated 9 weeks ago by ★ 2.0k • written 9 weeks ago by ▴ 100
2
votes
8
replies
1.7k
views
How to overlay tracks in IGV?
R IGV
8 months ago by cthangav ▴ 100
0
votes
0
replies
380
views
How to make Cicero Spider Plot
R Cicero IGV
10 months ago by cthangav ▴ 100
19
votes
4
replies
5.7k
views
Convert Human to Mouse Symbols
biomart R gene-symbols
updated 10 months ago by ★ 1.6k • written 10 months ago by ▴ 100
0
votes
1
reply
485
views
Putting Multiple ANOVA P-Values on Violin Plot
violin R ANOVA
updated 10 months ago by 10k • written 10 months ago by ▴ 100
0
votes
1
reply
567
views
Heatmap / Gene List Similarity
R
updated 11 months ago by ▴ 260 • written 11 months ago by ▴ 100
2
votes
1
reply
509
views
Filtering content in heatmap to highest values
R heatmap ggplot2
11 months ago by cthangav ▴ 100
5
votes
2
replies
520
views
Graphing Average Expression of Group of Genes
Boxplot R
updated 11 months ago by ★ 1.4k • written 11 months ago by ▴ 100
1
vote
2
replies
663
views
Identifying/Annotating Enhancers
bedtools R ENCODE
updated 10 months ago by 43k • written 12 months ago by ▴ 100
2
votes
1
reply
568
views
Pivot Table Help: A 'VALUE' Filters object has matched 10 row(s). Should have matched at most one row
R Pivottabler
updated 12 months ago by 11k • written 12 months ago by ▴ 100
3
votes
1
reply
645
views
How to Merge RNA Replicates
EdgeR FPKM RNA counts
updated 13 months ago by ★ 7.2k • written 13 months ago by ▴ 100
6
votes
3
replies
918
views
How to make line graph with circles in R
R
updated 14 months ago by ★ 2.0k • written 14 months ago by ▴ 100
13
votes
14
replies
4.8k
views
6 follow
Get TPM from RNA counts and gene length?
EdgeR RNA counts TPM
8 months ago by cthangav ▴ 100
2
votes
1
reply
723
views
Get GO Term Size from GO ID
GO-term R
updated 16 months ago by 43k • written 16 months ago by ▴ 100
2
votes
2
replies
646
views
Genes With List of Go terms
go-terms GO
updated 10 months ago by 43k • written 16 months ago by ▴ 100
2
votes
3
replies
720
views
Left Join Issue in R
R
17 months ago by cthangav ▴ 100
2
votes
1
reply
572
views
Run MACS2 on merged BAM file Error
ATAC-seq
updated 18 months ago by 82k • written 18 months ago by ▴ 100
0
votes
0
replies
444
views
TxImport for Transcript to Gene Level Conversion of RNA files
tximport R RNA
2.1 years ago by cthangav ▴ 100
1
vote
2
replies
1.1k
views
How to deal with multiple transcripts of the same gene?
biology RNA-seq splicing transcripts RNA. genes
updated 2.2 years ago by 82k • written 2.2 years ago by ▴ 100
0
votes
0
replies
684
views
Do you remove blacklisted regions before or after calling peaks?
ATAC-seq
2.5 years ago by cthangav ▴ 100
3
votes
2
replies
859
views
Batch File For Loop Help
syntax
updated 2.6 years ago by 21k • written 2.6 years ago by ▴ 100
0
votes
0
replies
654
views
Feature selection
Feature Selection R
updated 2.7 years ago by 82k • written 2.7 years ago by ▴ 100
0
votes
0
replies
615
views
How to get Read Counts from MACS2 output files?
ATAC-seq pileup narrowpeak readcounts MACS2
2.7 years ago by cthangav ▴ 100
5
votes
6
replies
1.5k
views
Looking up Gene IDs in R
R
2.7 years ago by cthangav ▴ 100
1
vote
5
replies
4.4k
views
Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY rows, data has 0
R
updated 2.8 years ago by 43k • written 2.8 years ago by ▴ 100
0
votes
2
replies
1.2k
views
Is the pileup value the ATAC-seq counts?
ATAC
2.9 years ago by cthangav ▴ 100
1
vote
5
replies
1.5k
views
Memory Error
R Memory MOFA
updated 3.0 years ago by ★ 2.5k • written 3.0 years ago by ▴ 100
0
votes
1
reply
3.2k
views
Is there a way to remove certain chromosomes from a GRanges Object?
GenomicRanges Package GRanges
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 100
5
votes
4
replies
1.3k
views
R command worked yesterday, but stalls today?
R
3.1 years ago by cthangav ▴ 100
0
votes
1
reply
1.4k
views
In enrichGO, BP subontology doesn't work, but CC ontology does?
R gene ontology clusterProfiler
updated 3.4 years ago by 20 • written 3.9 years ago by ▴ 100
0
votes
0
replies
752
views
Comparing Many Bed Files from GEO
ChIP-Seq ATAC-seq Meta-Analysis Bed GEO
3.6 years ago by cthangav ▴ 100
16
votes
7
replies
23k
views
7 follow
How to Make Dot Plots of GO Terms?
R dot plot gene ontology
updated 2.3 years ago by • 0 • written 3.7 years ago by ▴ 100
32 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6