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23
votes
18
replies
41k
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10 follow
Combining Data Of Multiple Vcfs Into One.
vcf variant-calling
written 12.1 years ago by ▴ 460
4
votes
9
replies
8.2k
views
Error When Merging Vcfs With Vcftools'S Vcf-Merge Function
vcf vcftools
updated 4.7 years ago by 20 • written 12.1 years ago by ▴ 460
0
votes
0
replies
13k
views
Comment: C: Reindex A Vcf File / How To Handle Cosmic Vcf Files
updated 5.5 years ago by 45k • written 12.1 years ago by ▴ 460
0
votes
1
reply
13k
views
Comment: A: Reindex A Vcf File / How To Handle Cosmic Vcf Files
updated 5.5 years ago by 45k • written 12.1 years ago by ▴ 460
0
votes
1
reply
8.2k
views
Comment: C: Error When Merging Vcfs With Vcftools'S Vcf-Merge Function
updated 5.6 years ago by 45k • written 12.1 years ago by ▴ 460
0
votes
0
replies
41k
views
Comment: C: Combining Data Of Multiple Vcfs Into One.
updated 6.5 years ago by 45k • written 12.1 years ago by ▴ 460
0
votes
1
reply
41k
views
Comment: C: Combining Data Of Multiple Vcfs Into One.
updated 6.5 years ago by 45k • written 12.1 years ago by ▴ 460
0
votes
1
reply
41k
views
Comment: C: Combining Data Of Multiple Vcfs Into One.
updated 6.5 years ago by 45k • written 12.1 years ago by ▴ 460
13
votes
5
replies
53k
views
7 follow
Obtaining The Snp Rs Number With The Chromosomal Position
r snps bioconductor
updated 3.8 years ago by ▴ 180 • written 12.2 years ago by ▴ 460
16
votes
10
replies
22k
views
Plink filtering with physical position using a text file
plink
updated 7.2 years ago by • 0 • written 7.7 years ago by ▴ 460
0
votes
0
replies
6.7k
views
Comment: C: Cannot remove subjects from Plink files
7.3 years ago by Sheila ▴ 460
0
votes
0
replies
2.5k
views
Calculating the read counts from LogCPM values (EdgeR)
RNA-Seq R
updated 7.7 years ago by 20 • written 7.7 years ago by ▴ 460
0
votes
1
reply
1.6k
views
Determining the subjects to use after obtaining a PC plot of population substructure
population stratification best practices GWAS
8.0 years ago by Sheila ▴ 460
0
votes
1
reply
2.7k
views
Haploview cannot connect to the internet?
Haploview LD
updated 8.0 years ago by 166k • written 8.0 years ago by ▴ 460
2
votes
1
reply
3.3k
views
case control association analysis with covariates in plink?
plink case-control association covariates
8.2 years ago by Sheila ▴ 460
4
votes
6
replies
12k
views
using biomaRt in R to annotate SNPs to Genes within 1000kb
biomart r bioconductor annotation
updated 8.2 years ago by 24k • written 8.2 years ago by ▴ 460
0
votes
0
replies
12k
views
Comment: C: using biomaRt in R to annotate SNPs to Genes within 1000kb
8.2 years ago by Sheila ▴ 460
0
votes
2
replies
6.7k
views
Comment: C: Cannot remove subjects from Plink files
8.2 years ago by Sheila ▴ 460
1
vote
5
replies
6.7k
views
Cannot remove subjects from Plink files
gwas plink filtering
8.2 years ago by Sheila ▴ 460
3
votes
1
reply
21k
views
Comment: C: What are good settings for filtering VCF files?
9.2 years ago by Sheila ▴ 460
0
votes
0
replies
2.5k
views
Is PlinkSeq no longer being supported?
plink plinkseq
9.2 years ago by Sheila ▴ 460
0
votes
0
replies
3.1k
views
Error In Loading Vcfs To Plink Seq
vcf
9.3 years ago by Sheila ▴ 460
6
votes
1
reply
3.8k
views
GWAS data from an Illumina Omni express Array and Illumina 660 W Quad Array
illumina data gwas
updated 3.0 years ago by 45k • written 9.4 years ago by ▴ 460
0
votes
0
replies
3.0k
views
Comment: Comment: Variant association in Whole Genome Sequencing data
updated 2.6 years ago by 45k • written 10.1 years ago by ▴ 460
0
votes
2
replies
3.0k
views
Variant association in Whole Genome Sequencing data
sequencing SNP next-gen
updated 2.6 years ago by 45k • written 11.0 years ago by ▴ 460
15
votes
4
replies
13k
views
Understanding Imputed Genotypes
imputation genetics
updated 11.2 years ago by ▴ 140 • written 12.0 years ago by ▴ 460
0
votes
0
replies
8.2k
views
Comment: C: Error When Merging Vcfs With Vcftools'S Vcf-Merge Function
12.0 years ago by Sheila ▴ 460
2
votes
1
reply
2.3k
views
Extracting Patient Ids From Imputed Genotype Data
gwas imputation
updated 12.1 years ago by 12k • written 12.1 years ago by ▴ 460
5
votes
6
replies
3.5k
views
Subsetting Vcf Data In Plink/Seq
vcf plink
updated 12.1 years ago by 20k • written 12.1 years ago by ▴ 460
0
votes
1
reply
3.5k
views
Comment: C: Subsetting Vcf Data In Plink/Seq
12.1 years ago by Sheila ▴ 460
0
votes
2
replies
3.5k
views
Comment: C: Subsetting Vcf Data In Plink/Seq
12.1 years ago by Sheila ▴ 460
0
votes
1
reply
8.2k
views
Comment: C: Error When Merging Vcfs With Vcftools'S Vcf-Merge Function
12.1 years ago by Sheila ▴ 460
0
votes
0
replies
8.2k
views
Comment: C: Error When Merging Vcfs With Vcftools'S Vcf-Merge Function
12.1 years ago by Sheila ▴ 460
0
votes
0
replies
4.0k
views
Comment: C: Selecting Specific Snps An Imputed Genotype File
12.1 years ago by Sheila ▴ 460
0
votes
1
reply
4.0k
views
Comment: C: Selecting Specific Snps An Imputed Genotype File
12.1 years ago by Sheila ▴ 460
0
votes
3
replies
5.8k
views
What Kind Of Analysis Can Do You With Vcf Files?
vcf dataset analysis snps sv indel
updated 12.2 years ago by ★ 1.1k • written 12.2 years ago by ▴ 460
0
votes
0
replies
45k
views
Comment: C: How To Analyze Imputed Gwas Data
12.2 years ago by Sheila ▴ 460
2
votes
4
replies
4.0k
views
Selecting Specific Snps An Imputed Genotype File
imputation genotype gwas
updated 12.2 years ago by 12k • written 12.2 years ago by ▴ 460
2
votes
5
replies
5.0k
views
What Are The Main Uses Of A Consensus Sequence?
ngs
updated 12.2 years ago by 33k • written 12.2 years ago by ▴ 460
0
votes
1
reply
5.0k
views
Comment: C: What Are The Main Uses Of A Consensus Sequence?
12.2 years ago by Sheila ▴ 460
37
votes
6
replies
17k
views
What Is The Difference Between Structural Variants (Svs) And Copy-Number Variants (Cnvs)?
genetics cnv sv
updated 12.2 years ago by 5.1k • written 12.2 years ago by ▴ 460
0
votes
0
replies
2.8k
views
Comment: C: What Are The Top 10 Ways That You Find Galaxy Most Useful For Whole Genome Seque
12.2 years ago by Sheila ▴ 460
0
votes
0
replies
2.8k
views
Comment: C: What Are The Top 10 Ways That You Find Galaxy Most Useful For Whole Genome Seque
12.2 years ago by Sheila ▴ 460
1
vote
4
replies
2.8k
views
What Are The Top 10 Ways That You Find Galaxy Most Useful For Whole Genome Sequencing Analysis?
galaxy ngs next-gen sequencing data
updated 12.2 years ago by 6.1k • written 12.2 years ago by ▴ 460
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