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3
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0
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3.6k
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Answer: A: GC content of promoters
updated 5.8 years ago by 45k • written 11.5 years ago by ▴ 270
0
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0
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3.3k
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Comment: C: Clustering of enhancer sites!!
updated 5.9 years ago by 45k • written 11.5 years ago by ▴ 270
1
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0
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3.3k
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Answer: A: Clustering of enhancer sites!!
updated 5.9 years ago by 45k • written 11.5 years ago by ▴ 270
0
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1
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16k
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Comment: A: Plotting Read Density/ Distribution/ Composite Profiles [Chip-Seq]
updated 5.9 years ago by 45k • written 11.5 years ago by ▴ 270
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0
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7.2k
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Comment: C: Aggregating Gene Expression Across Rows
updated 5.9 years ago by 45k • written 11.1 years ago by ▴ 270
0
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1
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2.1k
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Answer: A: how to merge different peak sparse matrices
6.7 years ago by aditi.qamra ▴ 270
1
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1
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3.4k
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Comment: C: ballgown has "." as Gene Names
6.8 years ago by aditi.qamra ▴ 270
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0
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1.1k
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Answer: A: Do some cancer type data in RTCGA cannot be downloaded?
6.8 years ago by aditi.qamra ▴ 270
0
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0
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1.2k
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Answer: A: compute genome composition (total amount of introns/exons etc)
6.8 years ago by aditi.qamra ▴ 270
1
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1
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2.3k
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Comment: C: Protist in UniProt/NCBI taxonomic tree
6.8 years ago by aditi.qamra ▴ 270
1
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1
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3.4k
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Comment: A: ballgown has "." as Gene Names
6.8 years ago by aditi.qamra ▴ 270
0
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0
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3.0k
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Comment: C: Mismatch number of reads after bedtools bam2fastq on RNA-seq data
7.3 years ago by aditi.qamra ▴ 270
0
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0
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3.0k
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Comment: C: Mismatch number of reads after bedtools bam2fastq on RNA-seq data
7.3 years ago by aditi.qamra ▴ 270
1
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4
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3.0k
views
Mismatch number of reads after bedtools bam2fastq on RNA-seq data
RNA-Seq alignment
updated 7.3 years ago by 5.9k • written 7.3 years ago by ▴ 270
0
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1
reply
5.1k
views
Combined Tss Plots For Chip Seq Peaks
chip-seq
updated 7.4 years ago by 20 • written 11.7 years ago by ▴ 270
1
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1
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2.6k
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Comment: C: Explain fig. 5 c of "The impact of rare variation on gene expression across tiss
8.1 years ago by aditi.qamra ▴ 270
1
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0
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2.6k
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Comment: C: Explain fig. 5 c of "The impact of rare variation on gene expression across tiss
8.1 years ago by aditi.qamra ▴ 270
0
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0
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2.7k
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Answer: A: Different BAM files generated using different commands in bash - which one is ri
8.1 years ago by aditi.qamra ▴ 270
0
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0
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1.8k
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Answer: A: Classifying DEGs based on the tissue where it is expressed
8.1 years ago by aditi.qamra ▴ 270
1
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1
reply
4.3k
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Batch correction for TCGA 450K data
dna-methylation TCGA 450k
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 270
2
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0
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1.9k
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Comment: A: Get number of hits programatically for a advanced query search in UniprotKb
8.6 years ago by aditi.qamra ▴ 270
0
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0
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2.4k
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Comment: A: How identify zero fold degradation sites
8.6 years ago by aditi.qamra ▴ 270
0
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1
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6.4k
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Comment: C: Cuffdiff takes extremely long time at "Testing for differential expression and r
9.3 years ago by aditi.qamra ▴ 270
1
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1
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6.4k
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Comment: C: Cuffdiff takes extremely long time at "Testing for differential expression and r
9.3 years ago by aditi.qamra ▴ 270
1
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1
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6.4k
views
Comment: C: Cuffdiff takes extremely long time at "Testing for differential expression and r
9.3 years ago by aditi.qamra ▴ 270
1
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1
reply
6.4k
views
Answer: A: Cuffdiff takes extremely long time at "Testing for differential expression and r
9.3 years ago by aditi.qamra ▴ 270
0
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1
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2.6k
views
Comment: C: Protein Sequence identifier to use after annotating variants (Swissprot or Unipa
9.3 years ago by aditi.qamra ▴ 270
0
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3
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2.6k
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Protein Sequence identifier to use after annotating variants (Swissprot or Uniparc) ?
vep uniprot ensembl
updated 9.3 years ago by ★ 2.4k • written 9.3 years ago by ▴ 270
0
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1
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4.7k
views
Answer: A: Getting subtypes of cancer from TCGA
9.3 years ago by aditi.qamra ▴ 270
0
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1
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13k
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Comment: A: Annotating TCGA MAFs with the latest Ensembl/Gencode transcripts
updated 9.3 years ago by 154k • written 9.3 years ago by ▴ 270
2
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1
reply
7.3k
views
Comment: Comment: histone mark associated with enhancers
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 270
1
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1
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7.3k
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Answer: A: histone mark associated with enhancers
10.9 years ago by aditi.qamra ▴ 270
1
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0
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3.5k
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Comment: Comment: Request for sites which are not promoter and enhancer as negative data for class
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 270
9
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9
replies
6.6k
views
Transcript support level in Gencode gtf v19
gencode annotation gtf
updated 3.3 years ago by 45k • written 11.0 years ago by ▴ 270
0
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0
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7.7k
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Comment: Comment: GSEA Error Message - "Dataset not set"
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 270
0
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1
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3.5k
views
Comment: C: Request for sites which are not promoter and enhancer as negative data for class
11.0 years ago by aditi.qamra ▴ 270
1
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3
replies
7.7k
views
GSEA Error Message - "Dataset not set"
GSEA
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 270
1
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1
reply
3.5k
views
Comment: Comment: Request for sites which are not promoter and enhancer as negative data for class
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 270
0
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1
reply
6.6k
views
Comment: Comment: Transcript support level in Gencode gtf v19
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 270
1
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0
replies
6.6k
views
Comment: Comment: Transcript support level in Gencode gtf v19
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 270
1
vote
1
reply
3.5k
views
Answer: Answer: Request for sites which are not promoter and enhancer as negative data for class
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 270
4
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3
replies
2.9k
views
Exons in Refseq-hg19
gene
updated 4.6 years ago by 45k • written 11.1 years ago by ▴ 270
1
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0
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7.7k
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Answer: Answer: GSEA Error Message - "Dataset not set"
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 270
0
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0
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4.6k
views
Comment: C: How to generate pretty bedgraph tracks ( publication quality)
11.3 years ago by aditi.qamra ▴ 270
1
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2
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4.6k
views
How to generate pretty bedgraph tracks ( publication quality)
visualisation bedgraphs
updated 11.3 years ago by 166k • written 11.3 years ago by ▴ 270
0
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0
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3.7k
views
Comment: Comment: Represent expression values
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 270
0
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1
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3.7k
views
Answer: Answer: Represent expression values
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 270
0
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1
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5.0k
views
Comment: C: Calculate complete Splicing Index (coSI) for exons
11.3 years ago by aditi.qamra ▴ 270
1
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3
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5.0k
views
Calculate complete Splicing Index (coSI) for exons
RNA-Seq
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 270
2
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3
replies
3.0k
views
Different annotation gtf file in Tophat2 and Cufflink
RNA-Seq
updated 4.1 years ago by 45k • written 11.5 years ago by ▴ 270
64 results • Page 1 of 2
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