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541
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DeconRNASeq: Extract gene names from returned mixing proportions
deconrnaseq bioconductor r
23 months ago by LRStar ▴ 200
25
votes
19
replies
21k
views
10 follow
Convert .Gff3 File To 12-Column .Bed File
methylation next-gen
updated 14 months ago by 43k • written 10.5 years ago by ▴ 200
3
votes
5
replies
1.1k
views
Determine NCBI Nucleotide source of .fasta amino acid file
fasta ncbi nucleotide
updated 4.3 years ago by 142k • written 4.3 years ago by ▴ 200
0
votes
0
replies
536
views
General pipeline for determining which tissues plasma cfDNA came from
cfdna liquidbiopsy
4.3 years ago by LRStar ▴ 200
55
votes
53
replies
7.2k
views
How to determine species of paired-end .fastq files (low mapping rates and inconsistent findings)
bacteria kraken spades blast sendsketch
updated 4.4 years ago by ▴ 30 • written 4.6 years ago by ▴ 200
1
vote
1
reply
1.7k
views
No alignment for multiple samples using DIAMOND on Galaxy (possible causes?)
diamond galaxy metagenomics bacteria alignment
4.6 years ago by LRStar ▴ 200
6
votes
11
replies
1.6k
views
How to determine which NCBI sequence to map against (multiple sequences for single taxID)
ncbi sendsketch bwa
4.6 years ago by LRStar ▴ 200
3
votes
9
replies
2.1k
views
Low Kraken mapping rate for unknown samples
bacteria alignment Assembly gene kraken
updated 4.6 years ago by 35k • written 4.6 years ago by ▴ 200
5
votes
6
replies
1.3k
views
Chromosome alignment visualization and gene elicitation for bacterial samples with unknown reference genomes
assembly alignment bacteria gene muave
4.7 years ago by LRStar ▴ 200
4
votes
3
replies
2.5k
views
Assemble bacterial .fastq files and find differences (SPAdes followed by MUMmer)
contig bacteria spades mummer SNP
updated 4.7 years ago by 21k • written 4.7 years ago by ▴ 200
3
votes
2
replies
1.2k
views
Assemble bacterial .fastq files and find differences in insertions, deletions, and duplications
Assembly insertions deletions bacteria
updated 4.7 years ago by 14k • written 4.7 years ago by ▴ 200
0
votes
0
replies
1.1k
views
Functional annotation chart from DAVID: Analogs or direct affiliations?
david annotation functional
5.2 years ago by LRStar ▴ 200
1
vote
2
replies
1.3k
views
Mapping metagenome information to amplicon sequences
ampliseq mapper
updated 5.7 years ago by ▴ 300 • written 5.7 years ago by ▴ 200
1
vote
1
reply
692
views
GeneID to BeeBaseID
genome
5.8 years ago by LRStar ▴ 200
0
votes
0
replies
921
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Statistical test for patterns in differentially expressed genes compared to variable
rna-seq
6.0 years ago by LRStar ▴ 200
6
votes
6
replies
5.8k
views
How is logFC and p-value estimated (for volcano plots)?
R edgeR fold-Change
updated 7 months ago by 43k • written 7.1 years ago by ▴ 200
6
votes
4
replies
7.3k
views
Preparing RNA-seq data for Hierarchical Clustering
RNA-Seq
updated 6.2 years ago by 87k • written 6.2 years ago by ▴ 200
1
vote
2
replies
1.9k
views
Convert Gene IDs into ENTREZ or ENSEMBL format (honey bee / apis mellifera)
rna-seq ensembl entrez
updated 6.5 years ago by 23k • written 6.5 years ago by ▴ 200
1
vote
4
replies
10.0k
views
Preparing a .genome file for snpEff
genomefile ngs snpEFF
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 200
1
vote
6
replies
2.4k
views
Terminology question: Phylogenetic tree duplicated generation counts
phylogeny terminology graph
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 200
20 results • Page 1 of 1
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