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1
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1
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1.5k
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UK biobank exome filtering
exome UKbiobank
updated 4.4 years ago by • 0 • written 4.7 years ago by ★ 1.0k
1
vote
1
reply
1.1k
views
Calculating simple allele specific expression for certain variants
ASE RNA-Seq allele specific expression
5.2 years ago by Floris Brenk ★ 1.0k
5
votes
1
reply
3.5k
views
Answer: A: Covariates for eQTL analysis
5.4 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
936
views
BAF and L2R Illumina vs Affymetrix
CNV BAF L2R
5.4 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
3.8k
views
Looking for a whole genome sequencing analysis course
whole genome WGS
updated 5.6 years ago by 20 • written 9.3 years ago by ★ 1.0k
0
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1
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5.2k
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Comment: C: Sizes of Nanopore files and how to store?
5.6 years ago by Floris Brenk ★ 1.0k
7
votes
3
replies
5.2k
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Sizes of Nanopore files and how to store?
Nanopore WGS Long-Read
updated 5.6 years ago by 48k • written 5.6 years ago by ★ 1.0k
2
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1
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5.0k
views
Answer: A: What's the best way to map CAGE-seq data to the genome?
updated 5.8 years ago by 45k • written 11.5 years ago by ★ 1.0k
3
votes
1
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12k
views
Answer: A: Reformat minimac imputated files to plink file
updated 5.8 years ago by 45k • written 11.5 years ago by ★ 1.0k
1
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0
replies
3.8k
views
Answer: C: test Tophat ERROR
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 1.0k
0
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1
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1.1k
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chromosome X and Y GWAS results
chromosome-X GWAS chromosome-Y
updated 2.9 years ago by 45k • written 5.9 years ago by ★ 1.0k
3
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0
replies
46k
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Comment: C: 1000 Genomes Ld Calculation
updated 6.2 years ago by 45k • written 11.8 years ago by ★ 1.0k
0
votes
1
reply
1.6k
views
Rare variant meta-analyzing tests
meta analyze rare variants
updated 6.5 years ago by • 0 • written 7.7 years ago by ★ 1.0k
1
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0
replies
1.1k
views
Epistasis in GWAS loci, examples?
epistasis GWAS R
6.7 years ago by Floris Brenk ★ 1.0k
0
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0
replies
2.9k
views
Comment: C: Allele Frequency correlation in R
updated 7.1 years ago by 45k • written 9.7 years ago by ★ 1.0k
0
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1
reply
2.2k
views
XHMM GATK exome sequencing deletions genome wide or selected genes ?
xhmm gatk genelist
updated 7.1 years ago by 45k • written 9.7 years ago by ★ 1.0k
1
vote
1
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3.6k
views
Comment: C: Remove rows based on duplicates in one column
updated 7.2 years ago by 45k • written 9.7 years ago by ★ 1.0k
0
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0
replies
2.2k
views
Comment: C: XHMM GATK exome sequencing deletions genome wide or selected genes ?
updated 7.2 years ago by 45k • written 9.7 years ago by ★ 1.0k
0
votes
1
reply
3.4k
views
Add gene annotation/information to CNV plot in R
cnv plot R
updated 8.0 years ago by ★ 4.4k • written 8.0 years ago by ★ 1.0k
0
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0
replies
6.4k
views
Comment: C: ATACseq and HiC sequencing
8.1 years ago by Floris Brenk ★ 1.0k
4
votes
7
replies
6.4k
views
ATACseq and HiC sequencing
atac hic
updated 8.1 years ago by 105k • written 8.1 years ago by ★ 1.0k
0
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1
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6.4k
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Comment: C: ATACseq and HiC sequencing
8.1 years ago by Floris Brenk ★ 1.0k
0
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0
replies
4.5k
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Comment: C: How to make a nice mutation overview figure like this?
8.2 years ago by Floris Brenk ★ 1.0k
1
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0
replies
4.5k
views
Answer: A: How to make a nice mutation overview figure like this?
8.2 years ago by Floris Brenk ★ 1.0k
4
votes
6
replies
4.5k
views
How to make a nice mutation overview figure like this?
R
8.2 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
1.7k
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PCA matching controls with cases using genotypes
PCA plink
8.2 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
4.5k
views
Comment: C: How to make a nice mutation overview figure like this?
8.2 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
14k
views
Answer: A: Duplicate ID in bed file
8.2 years ago by Floris Brenk ★ 1.0k
2
votes
1
reply
5.9k
views
Output the call rate of genotypes in plink
plink
updated 8.3 years ago by 11k • written 8.3 years ago by ★ 1.0k
1
vote
1
reply
3.4k
views
Making a vcf file from a subset of regions from gvcf files
gatk vcf
updated 8.3 years ago by ▴ 180 • written 8.3 years ago by ★ 1.0k
0
votes
0
replies
2.2k
views
Comment: C: extract SNPs (rs.....) along with subject ID and pedigree ID in PLINK
8.4 years ago by Floris Brenk ★ 1.0k
12
votes
10
replies
10k
views
Imputation of chromosome X using the Michigan imputation server
imputation chrX genotypes
updated 8.4 years ago by ▴ 60 • written 8.6 years ago by ★ 1.0k
1
vote
2
replies
3.7k
views
Gene lists and calculated Ka/Ks ratio per gene
conservation gene-family
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.0k
1
vote
0
replies
10k
views
Comment: C: Imputation of chromosome X using the Michigan imputation server
8.4 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
1.2k
views
Merge several association signals in a region and use as a phenotype
riskscore gwas
updated 8.4 years ago by 20 • written 8.4 years ago by ★ 1.0k
0
votes
1
reply
3.0k
views
Comment: C: Chromosome Y imputation, any good reference panels?
8.5 years ago by Floris Brenk ★ 1.0k
1
vote
3
replies
3.0k
views
Chromosome Y imputation, any good reference panels?
imputation genotyping chrY
8.5 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
10k
views
Comment: C: Imputation of chromosome X using the Michigan imputation server
8.5 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
6.9k
views
Comment: C: Cannot remove subjects from Plink files
8.6 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
10k
views
Comment: C: Imputation of chromosome X using the Michigan imputation server
8.6 years ago by Floris Brenk ★ 1.0k
2
votes
0
replies
2.7k
views
Answer: C: finding unique mutations from a multi-sample VCF
8.6 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
2.1k
views
Creating basic phylogenetic trees of human haplotype in R
R phylogenetic haplotype
8.6 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
12k
views
Comment: C: How to annotate TTS or TES
8.7 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
1.4k
views
tool for identifying structural variation for DNA
DNA CNV
8.7 years ago by Floris Brenk ★ 1.0k
2
votes
0
replies
2.9k
views
Answer: A: Which SNPs fall within genes and what's their description?
8.7 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
2.5k
views
Comment: C: RNA seq library preparation, PCR cycles
8.7 years ago by Floris Brenk ★ 1.0k
1
vote
8
replies
2.1k
views
Detect chromosome abnormalities in WGS
WGS insertions deletions
updated 8.9 years ago by 20 • written 9.0 years ago by ★ 1.0k
0
votes
1
reply
3.2k
views
Comment: C: vcftools merge files problem
8.9 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
3.2k
views
Comment: C: vcftools merge files problem
8.9 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
2.0k
views
Comment: C: risk value with genetic data
8.9 years ago by Floris Brenk ★ 1.0k
178 results • Page 1 of 4
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