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435
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How can I get raw CPTAC protein quantification data ?
CPTAC proteomics proteins python transcriptome
8 months ago by AlexStar ▴ 200
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1
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801
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Comment: Comment: Understanding how to deal with Brain snRNA-seq data
8 months ago by AlexStar ▴ 200
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3
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801
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Understanding how to deal with Brain snRNA-seq data
scanpy python single-cell anndata RNA
updated 8 months ago by ★ 4.7k • written 8 months ago by ▴ 200
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1
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1.2k
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Comment: Comment: snRNA-seq of the healthy human brain
9 months ago by AlexStar ▴ 200
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1
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1.2k
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Comment: Comment: snRNA-seq of the healthy human brain
9 months ago by AlexStar ▴ 200
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5
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1.2k
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snRNA-seq of the healthy human brain
python scanpy anndata single-cell
updated 9 months ago by 5.1k • written 9 months ago by ▴ 200
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2
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904
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Comment: Comment: Ontology for column naming in RNA-seq data
9 months ago by AlexStar ▴ 200
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4
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904
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Ontology for column naming in RNA-seq data
python scanpy anndata single-cell
updated 9 months ago by 153k • written 9 months ago by ▴ 200
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0
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768
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Comment: Comment: Help with finding scRNA-seq data
10 months ago by AlexStar ▴ 200
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3
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768
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Help with finding scRNA-seq data
10x scanpy python single-cell anndata
updated 4 months ago by ▴ 100 • written 10 months ago by ▴ 200
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0
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1.1k
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Comment: Comment: Using Tumor Immune Dysfunction and Exclusion (TIDE)
10 months ago by AlexStar ▴ 200
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2
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1.1k
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Using Tumor Immune Dysfunction and Exclusion (TIDE)
TPM cancer r
10 months ago by AlexStar ▴ 200
3
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1
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734
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What is the reason that all high throughput sequencing data for the human brain is snRNA-seq instead of scRNA-seq ?
10x scanpy python single-cell anndata
updated 10 months ago by ★ 19k • written 10 months ago by ▴ 200
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1
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444
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What are the epithelial cells subtype in esophagus tissue ?
python scanpy anndata single-cell
updated 11 months ago by 89k • written 11 months ago by ▴ 200
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1
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1.4k
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
14 months ago by AlexStar ▴ 200
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0
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1.4k
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
14 months ago by AlexStar ▴ 200
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1
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1.4k
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
14 months ago by AlexStar ▴ 200
1
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7
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1.4k
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How do decide if a processed scRNA-seq data is read counts or UMI format ?
scanpy python single-cell anndata RNA
updated 14 months ago by 89k • written 14 months ago by ▴ 200
2
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6
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1.2k
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Finding scRNA-seq datasets of healthy human ovaries
python GEO single-cell RNA
updated 15 months ago by 45k • written 15 months ago by ▴ 200
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0
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1.2k
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
15 months ago by AlexStar ▴ 200
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0
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1.2k
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
15 months ago by AlexStar ▴ 200
1
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1
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1.2k
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
15 months ago by AlexStar ▴ 200
1
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1
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1.9k
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Reading files from different types as H5AD
python scanpy anndata single-cell
updated 15 months ago by ★ 3.1k • written 15 months ago by ▴ 200
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1
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2.5k
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Comment: Comment: Applying the metacell2 algorithm using python
16 months ago by AlexStar ▴ 200
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0
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409
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Empty kernel in SEACells model
single-cell scanpy seacells python anndata
16 months ago by AlexStar ▴ 200
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1
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2.5k
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Comment: Comment: Applying the metacell2 algorithm using python
16 months ago by AlexStar ▴ 200
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9
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2.5k
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Applying the metacell2 algorithm using python
python single-cell scanpy metacell2
updated 16 months ago by ★ 2.1k • written 16 months ago by ▴ 200
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0
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2.5k
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Comment: Comment: Applying the metacell2 algorithm using python
16 months ago by AlexStar ▴ 200
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1
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2.5k
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Comment: Comment: Applying the metacell2 algorithm using python
16 months ago by AlexStar ▴ 200
12
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7
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8.9k
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6 follow
Convert FPKM to TPM in R
r TPM normalization meta-analysis
updated 19 months ago by 45k • written 3.0 years ago by ▴ 200
4
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10
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2.8k
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6 follow
Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
GEO RNA-seq
updated 20 months ago by 45k • written 20 months ago by ▴ 200
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1
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2.8k
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Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
20 months ago by AlexStar ▴ 200
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0
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2.8k
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Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
20 months ago by AlexStar ▴ 200
6
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5
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1.8k
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Log2 transformation is well used, but is there a good paper that can be used as reference ?
TPM log2-transformation r
updated 20 months ago by 89k • written 20 months ago by ▴ 200
1
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2
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922
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What type of cancer did they study in this paper?
cancer RNAseq single-cell
updated 22 months ago by 153k • written 22 months ago by ▴ 200
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1
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1.0k
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Comment: Comment: Discrepancies Between GEO Page and its article - Seeking Clarification
23 months ago by AlexStar ▴ 200
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3
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1.0k
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Discrepancies Between GEO Page and its article - Seeking Clarification
cancer GEO RNA-seq
updated 23 months ago by 45k • written 23 months ago by ▴ 200
1
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1
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10.0k
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Comment: Comment: Code for reading h5ad files in R
23 months ago by AlexStar ▴ 200
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1
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10.0k
views
Comment: Comment: Code for reading h5ad files in R
23 months ago by AlexStar ▴ 200
3
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5
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10.0k
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Code for reading h5ad files in R
r RNA-seq single-cell
updated 23 months ago by ★ 1.7k • written 23 months ago by ▴ 200
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1
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1.8k
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
2.1 years ago by AlexStar ▴ 200
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1
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1.8k
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
2.1 years ago by AlexStar ▴ 200
0
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0
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1.8k
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
2.1 years ago by AlexStar ▴ 200
0
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8
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1.8k
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Understaning the result of Meta-analysis of differential expression across datasets
r differential-expression genes
updated 2.1 years ago by 22k • written 2.1 years ago by ▴ 200
0
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0
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2.0k
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Comment: Comment: Performing differential expression analysis after applying transformations on my
2.1 years ago by AlexStar ▴ 200
0
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1
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2.0k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
2.1 years ago by AlexStar ▴ 200
0
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1
reply
2.0k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
2.1 years ago by AlexStar ▴ 200
0
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1
reply
2.0k
views
Comment: Comment: Performing differential expression analysis after applying transformations on my
2.1 years ago by AlexStar ▴ 200
0
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1
reply
951
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Remove batch effects on the train set to avoid information leakage
r limma batch-effect
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 200
0
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11
replies
2.0k
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Performing differential expression analysis after applying transformations on my data
normalization differential-expression r
2.1 years ago by AlexStar ▴ 200
148 results • Page 1 of 3
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