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How to control for UV mutational signature? (for recurrent somatic mutation)
UV somatic-signature melanoma
updated 11 months ago by • 0 • written 2.1 years ago by ▴ 60
1
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1
reply
661
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How to determine if a somatic mutation alters transcription factor binding site?
cancer motif TFBS somatic-mutation
updated 20 months ago by 45k • written 20 months ago by ▴ 60
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2.1k
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Comment: Comment: Help locating TCGA data from cbioportal
2.0 years ago by ConvolutedGenome ▴ 60
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0
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2.1k
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Comment: Comment: Help locating TCGA data from cbioportal
2.0 years ago by ConvolutedGenome ▴ 60
0
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1
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2.1k
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Comment: Comment: Help locating TCGA data from cbioportal
2.0 years ago by ConvolutedGenome ▴ 60
0
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6
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2.1k
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Help locating TCGA data from cbioportal
cancer TCGA RNA cbioportal CNA
2.0 years ago by ConvolutedGenome ▴ 60
0
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0
replies
648
views
Understanding consensus CNV of PCAWG data
cancer PCAWG CNV consensus GISTIC
2.0 years ago by ConvolutedGenome ▴ 60
0
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1
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2.6k
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Comment: Comment: Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
2.3 years ago by ConvolutedGenome ▴ 60
2
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3
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2.6k
views
Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
hs37d5 hg19 reference hg38 PCAWG
updated 2.3 years ago by ★ 1.3k • written 2.3 years ago by ▴ 60
0
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0
replies
662
views
Anyone familiar with ICGC's DCC data releases?
cancer TCGA PCAWG ICGC somatic
2.6 years ago by ConvolutedGenome ▴ 60
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0
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8.1k
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Comment: Comment: TSS of protein coding genes
2.6 years ago by ConvolutedGenome ▴ 60
0
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1
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8.1k
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Comment: Comment: TSS of protein coding genes
2.6 years ago by ConvolutedGenome ▴ 60
0
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0
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2.3k
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Comment: Comment: What is exactly meant by "GENCODE TSS"?
2.7 years ago by ConvolutedGenome ▴ 60
1
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3
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2.3k
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What is exactly meant by "GENCODE TSS"?
GENCODE transcription annotation TSS gene
2.7 years ago by ConvolutedGenome ▴ 60
0
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1
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8.1k
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Comment: Comment: TSS of protein coding genes
2.7 years ago by ConvolutedGenome ▴ 60
0
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0
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4.7k
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Comment: Comment: How exactly can I define promoter region from GENCODE annotation GTF file?
2.7 years ago by ConvolutedGenome ▴ 60
0
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0
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4.7k
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Comment: Comment: How exactly can I define promoter region from GENCODE annotation GTF file?
2.7 years ago by ConvolutedGenome ▴ 60
0
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1
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4.7k
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Comment: Comment: How exactly can I define promoter region from GENCODE annotation GTF file?
2.7 years ago by ConvolutedGenome ▴ 60
0
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2
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4.7k
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Comment: Comment: How exactly can I define promoter region from GENCODE annotation GTF file?
2.7 years ago by ConvolutedGenome ▴ 60
5
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8
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4.7k
views
How exactly can I define promoter region from GENCODE annotation GTF file?
promoter protein-coding GENCODE annotation
2.7 years ago by ConvolutedGenome ▴ 60
2
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2
replies
1.6k
views
Resources to learn illumina's GenomeStudio?
Genotype Illumina SNP Microarray Array
updated 2.7 years ago by 154k • written 3.9 years ago by ▴ 60
22
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28
replies
23k
views
14 follow
Easy way to split VCF file by chromosome
sequence TOPMED chromosome Imputation SNP
updated 13 months ago by 166k • written 3.8 years ago by ▴ 60
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0
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1.7k
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Comment: Comment: How to get gene list from GENCODE gtf file?
2.7 years ago by ConvolutedGenome ▴ 60
1
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2
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1.7k
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How to get gene list from GENCODE gtf file?
protein-coding GENCODE gene
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 60
0
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0
replies
785
views
How many genes are used by DAVID as the default homo sapiens background?
fisher DAVID enrichment background cancer
3.5 years ago by ConvolutedGenome ▴ 60
0
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0
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23k
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Comment: Comment: Easy way to split VCF file by chromosome
3.8 years ago by ConvolutedGenome ▴ 60
1
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1
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2.0k
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Why exactly do I need to fix ref allele using bcftools ?? [Genotype data]
VCF Genotype reference SNP bcftools
updated 3.8 years ago by ▴ 470 • written 3.8 years ago by ▴ 60
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0
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658
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[GenomeStudio] Why do some SNPs are listed as 'edited' eventhough I haven't edited those SNPs???
microarray SNP GenomeStudio genotype illumina
3.9 years ago by ConvolutedGenome ▴ 60
0
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0
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1.8k
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Comment: Comment: P-value cut-off to identify SNPs at ChIP-seq peaks? [BedTools]
3.9 years ago by ConvolutedGenome ▴ 60
0
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1
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1.8k
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Comment: Comment: P-value cut-off to identify SNPs at ChIP-seq peaks? [BedTools]
3.9 years ago by ConvolutedGenome ▴ 60
3
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4
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1.8k
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P-value cut-off to identify SNPs at ChIP-seq peaks? [BedTools]
ChIP-seq epigenomic H3K27ac Roadmap broadpeak
3.9 years ago by ConvolutedGenome ▴ 60
0
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0
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670
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Intersecting Roadmap's Histone ChIP-seq data using BedTools?!?!??!
Histone Enhancer H3K27ac Epigenetic BedTools
3.9 years ago by ConvolutedGenome ▴ 60
0
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0
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665
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How to get started with analyzing Genotype data from microarray?
Genotype Illumina eQTL Microarray Array
4.0 years ago by ConvolutedGenome ▴ 60
0
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0
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2.2k
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Comment: Comment: What exactly is RNA-seq probe?
4.0 years ago by ConvolutedGenome ▴ 60
0
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1
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2.2k
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Comment: Comment: What exactly is RNA-seq probe?
4.0 years ago by ConvolutedGenome ▴ 60
0
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1
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2.2k
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Comment: Comment: What exactly is RNA-seq probe?
4.0 years ago by ConvolutedGenome ▴ 60
3
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6
replies
2.2k
views
What exactly is RNA-seq probe?
reference genome GTEx eQTL RNA-seq pipeline
updated 4.0 years ago by 154k • written 4.0 years ago by ▴ 60
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