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How to determine if a somatic mutation alters transcription factor binding site?
cancer motif TFBS somatic-mutation
updated 8 weeks ago by 43k • written 9 weeks ago by ▴ 30
0
votes
6
replies
910
views
Help locating TCGA data from cbioportal
cancer TCGA RNA cbioportal CNA
5 months ago by ConvolutedGenome ▴ 30
0
votes
0
replies
282
views
Understanding consensus CNV of PCAWG data
cancer PCAWG CNV consensus GISTIC
6 months ago by ConvolutedGenome ▴ 30
0
votes
0
replies
227
views
How to control for UV mutational signature? (for recurrent somatic mutation)
UV somatic-signature melanoma
updated 6 months ago by 43k • written 7 months ago by ▴ 30
2
votes
3
replies
1.1k
views
Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
hs37d5 hg19 reference hg38 PCAWG
updated 9 months ago by ★ 1.2k • written 9 months ago by ▴ 30
0
votes
0
replies
289
views
Anyone familiar with ICGC's DCC data releases?
cancer TCGA PCAWG ICGC somatic
13 months ago by ConvolutedGenome ▴ 30
1
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3
replies
1.1k
views
What is exactly meant by "GENCODE TSS"?
GENCODE transcription annotation TSS gene
13 months ago by ConvolutedGenome ▴ 30
5
votes
8
replies
2.3k
views
How exactly can I define promoter region from GENCODE annotation GTF file?
promoter protein-coding GENCODE annotation
14 months ago by ConvolutedGenome ▴ 30
0
votes
2
replies
892
views
Resources to learn illumina's GenomeStudio?
Genotype Illumina SNP Microarray Array
updated 14 months ago by 142k • written 2.4 years ago by ▴ 30
18
votes
25
replies
15k
views
13 follow
Easy way to split VCF file by chromosome
sequence TOPMED chromosome Imputation SNP
updated 10 months ago by 161k • written 2.3 years ago by ▴ 30
1
vote
2
replies
675
views
How to get gene list from GENCODE gtf file?
protein-coding GENCODE gene
updated 13 months ago by 43k • written 14 months ago by ▴ 30
0
votes
0
replies
456
views
How many genes are used by DAVID as the default homo sapiens background?
fisher DAVID enrichment background cancer
2.0 years ago by ConvolutedGenome ▴ 30
1
vote
1
reply
994
views
Why exactly do I need to fix ref allele using bcftools ?? [Genotype data]
VCF Genotype reference SNP bcftools
updated 2.3 years ago by ▴ 470 • written 2.3 years ago by ▴ 30
0
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0
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393
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[GenomeStudio] Why do some SNPs are listed as 'edited' eventhough I haven't edited those SNPs???
microarray SNP GenomeStudio genotype illumina
2.4 years ago by ConvolutedGenome ▴ 30
3
votes
4
replies
945
views
P-value cut-off to identify SNPs at ChIP-seq peaks? [BedTools]
ChIP-seq epigenomic H3K27ac Roadmap broadpeak
2.4 years ago by ConvolutedGenome ▴ 30
0
votes
0
replies
417
views
Intersecting Roadmap's Histone ChIP-seq data using BedTools?!?!??!
Histone Enhancer H3K27ac Epigenetic BedTools
2.4 years ago by ConvolutedGenome ▴ 30
0
votes
0
replies
414
views
How to get started with analyzing Genotype data from microarray?
Genotype Illumina eQTL Microarray Array
2.5 years ago by ConvolutedGenome ▴ 30
3
votes
6
replies
1.3k
views
What exactly is RNA-seq probe?
reference genome GTEx eQTL RNA-seq pipeline
updated 2.5 years ago by 142k • written 2.5 years ago by ▴ 30
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