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446 results • Page 1 of 9
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206
votes
58
replies
38k
views
31 follow
Forum: Will Python Take The Place Of R?
r statistics python biopython
updated 25 days ago by 38k • written 9.8 years ago by 9.5k
20
votes
12
replies
37k
views
7 follow
Forum: When To Use Sed Awk Over Perl Or Python
perl python awk
updated 20 days ago by 38k • written 9.2 years ago by 9.5k
115
votes
35
replies
36k
views
20 follow
Forum: Snakemake vs. Nextflow: strengths and weaknesses
snakemake nextflow Forum
updated 11 days ago by ▴ 30 • written 5.8 years ago by ▴ 760
41
votes
17
replies
35k
views
15 follow
Forum: List Of Genome Sequencing Centers/Institutes
genomics institutes
updated 26 days ago by 38k • written 10.1 years ago by 19k
21
votes
3
replies
31k
views
Forum: Did You Know That Researchgate Is Spamming Your Colleagues (Perhaps Without Your Explicit Consent)?
researchgate
updated 26 days ago by 38k • written 10.1 years ago by 20k
126
votes
44
replies
27k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 12 days ago by 38k • written 6.5 years ago by ▴ 970
57
votes
19
replies
26k
views
6 follow
Forum: Attention: Bowtie2 And Multiple Hits
next-gen bowtie mapping
updated 27 days ago by 38k • written 10.4 years ago by 9.9k
151
votes
39
replies
22k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics
updated 26 days ago by 38k • written 10.2 years ago by 3.0k
262
votes
48
replies
20k
views
37 follow
Forum: Bioinformatics courses, workshops or training
Workshop Training Courses
updated 23 days ago by ▴ 970 • written 7.9 years ago by ★ 4.2k
136
votes
41
replies
20k
views
20 follow
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
meta
updated 25 days ago by 38k • written 9.8 years ago by ★ 1.6k
106
votes
23
replies
20k
views
16 follow
Forum: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
bioinformatics
updated 19 days ago by 38k • written 9.1 years ago by ▴ 570
65
votes
26
replies
18k
views
13 follow
Forum: Macosx For Bioinformatics?
linux
updated 20 days ago by 38k • written 9.3 years ago by 11k
36
votes
21
replies
16k
views
9 follow
Forum: What Is Your Favorite Conserved Protein?
protein conservation
updated 22 days ago by 38k • written 9.6 years ago by 11k
31
votes
13
replies
15k
views
8 follow
Forum: Should I Pursue A Bioinformatics Msc?
career
updated 26 days ago by 38k • written 10.1 years ago by ▴ 70
159
votes
38
replies
15k
views
22 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
updated 26 days ago by 38k • written 10.0 years ago by 97k
93
votes
50
replies
14k
views
17 follow
Forum: Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
personal-genomics 23andMe
updated 20 days ago by 38k • written 9.3 years ago by 97k
61
votes
11
replies
14k
views
9 follow
Forum: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
programming
updated 22 days ago by 38k • written 9.7 years ago by 19k
42
votes
21
replies
14k
views
10 follow
Forum: A Database Of Signatures Of Selection In The 1000 Genomes Dataset
1000genomes human selection
updated 18 days ago by 38k • written 9.1 years ago by 27k
57
votes
43
replies
14k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 12 days ago by 38k • written 4.2 years ago by 9.9k
19
votes
0
replies
13k
views
Forum: Hadley Wickham of ggplot and RStudio uses this
uses-this
updated 13 days ago by 38k • written 8.4 years ago by 97k
20
votes
22
replies
12k
views
11 follow
Forum: Nextseq for analysts
basespace casava bcl2fastq nextseq
updated 15 days ago by 38k • written 8.7 years ago by 5.3k
8
votes
2
replies
12k
views
Forum: List of popular bioinformatics software/tools
software
updated 13 days ago by 38k • written 8.5 years ago by ▴ 20
6
votes
12
replies
12k
views
11 follow
Forum: Online/remote/distance learning/ - partime/fulltime - PhD, Bioinformatics in USA
PhD university
updated 13 days ago by 38k • written 6.5 years ago by ▴ 20
105
votes
46
replies
11k
views
13 follow
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
epigenetics
updated 22 days ago by 38k • written 9.6 years ago by ★ 1.1k
60
votes
14
replies
11k
views
14 follow
Forum: Interesting bioinformatics blogs (2017 edition)
blogs
updated 25 days ago by 38k • written 6.0 years ago by 47k
32
votes
13
replies
10k
views
10 follow
Forum: What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
genomics phd
updated 29 days ago by 38k • written 10.6 years ago by ▴ 650
12
votes
8
replies
9.8k
views
8 follow
Forum: "Separate enrichment analysis of pathways for up- and downregulated genes"
enrichmnet-analysis
updated 15 days ago by 38k • written 8.9 years ago by ★ 2.9k
15
votes
14
replies
9.7k
views
6 follow
Forum: How Should I Go About Preparing For My Bioinformatics Phd Admissions Interview?
phd
updated 19 days ago by 38k • written 9.1 years ago by ▴ 150
3
votes
2
replies
9.5k
views
Forum: How To Provide Reference Sequence Dictionary To Reordersam?
picard gatk
updated 20 days ago by 38k • written 9.3 years ago by 8.2k
0
votes
2
replies
9.4k
views
Forum: Secondary Structure Prediction software RNA/DNA
dna secondary-structure software rna
updated 13 days ago by 38k • written 8.4 years ago by ★ 3.6k
24
votes
15
replies
9.3k
views
11 follow
Forum: PhD in bioinformatics or biostatistics as a wet-lab scientist?
biology statistics PhD
updated 13 days ago by 38k • written 8.6 years ago by ▴ 70
10
votes
6
replies
9.3k
views
Forum: Is it worth getting a Masters in Bioinformatics, financially?
career
updated 15 days ago by 38k • written 8.8 years ago by ▴ 20
50
votes
8
replies
9.0k
views
6 follow
Forum: Encode Commentary From Dan Graur
encode
updated 26 days ago by 38k • written 10.1 years ago by 16k
5
votes
4
replies
8.9k
views
Forum: List of unresolved problems in Computational Biology / Bioinformatics?
computational-biology problems
updated 7 days ago by 38k • written 8.2 years ago by ★ 1.3k
11
votes
10
replies
8.6k
views
Forum: Looking For Bioinformatics Job In Germany
bioinformatician career
updated 15 days ago by 38k • written 9.0 years ago by ▴ 500
12
votes
4
replies
8.2k
views
Forum: Bioinformatics/Biotech Firms In India
career
updated 29 days ago by 38k • written 10.9 years ago by ▴ 100
22
votes
14
replies
8.0k
views
6 follow
Forum: Too late to switch to Bioinformatics?
education career
updated 15 days ago by 38k • written 8.8 years ago by ▴ 30
10
votes
3
replies
8.0k
views
Forum: Got Multiple Cpus? Activate Them With Gnu Parallel
parallel command-line ngs
updated 20 days ago by 38k • written 9.3 years ago by ★ 4.3k
99
votes
21
replies
7.9k
views
14 follow
Forum: How Has Bioinformatics Improved Over Time?
bioinformatics
updated 26 days ago by 38k • written 10.1 years ago by ▴ 370
9
votes
19
replies
7.9k
views
Forum: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Same Input Parameters With Openmp Enabled.
velvet genome
updated 20 days ago by 38k • written 9.3 years ago by ▴ 650
9
votes
4
replies
7.8k
views
Forum: Biofinysics - How does bowtie2 assign MAPQ scores?
alignment bowtie2
updated 13 days ago by 38k • written 8.6 years ago by 7.7k
46
votes
9
replies
7.8k
views
10 follow
Forum: Bioinformatics For Clinicians - What To Teach Them?
education
updated 20 days ago by 38k • written 9.3 years ago by ▴ 140
13
votes
5
replies
7.8k
views
Forum: Funding Opportunities In Bioinformatics
grant
updated 26 days ago by 38k • written 10.1 years ago by 20k
64
votes
8
replies
7.8k
views
7 follow
Forum: Isaac Asimov Accurately Predicts Woes Of Bioinformatician
bioinformatician
updated 25 days ago by 38k • written 9.9 years ago by 20k
26
votes
0
replies
7.7k
views
Forum: Heng Li of BWA and Samtools uses this
uses-this
updated 13 days ago by 38k • written 8.5 years ago by 97k
5
votes
4
replies
7.3k
views
Forum: Masters In Bioinformatics Vs Masters In Information Technology (Computer Science)
career
updated 16 days ago by 38k • written 9.0 years ago by • 0
5
votes
6
replies
7.3k
views
Forum: Msc Bioinformatics Project Ideas
project
updated 29 days ago by 38k • written 10.9 years ago by ▴ 50
47
votes
37
replies
7.3k
views
12 follow
Forum: The Organisation Of Really Contrived Acronyms (Orca)
acronyms
updated 22 days ago by 38k • written 9.6 years ago by 2.3k
60
votes
28
replies
7.2k
views
27 follow
Forum: Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 13 days ago by 38k • written 8.5 years ago by 97k
34
votes
19
replies
7.1k
views
12 follow
Forum: Programming Language In Bioinformatics
perl python
updated 26 days ago by 38k • written 9.9 years ago by ▴ 260
446 results • Page 1 of 9
Recent Votes
Answer: Splitting a Nebulosa (Seurat wrapper) visualization by treatment group
Answer: API REST ALINGMENT
Comment: Can I use abundance from Tximport to compare the expression level of transcript
Comment: getting coding exon information from Ensembl API
C: How to install TMAP
If there is a way to link two gosling html components in two <div>s.
A: Using GATK's HaplotypeCaller or Mutect2 for somatic cancer samples with no norma
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Recent Replies
Answer: Multiple samples and species with kallisto bus(tools) by dsull ★ 4.0k
Hello! There are two questions here: 1) Mixed species, and 2) Multiple samples Let's start with question 1: You don't really know what c…
Comment: What is exactly meant by "GENCODE TSS"? by ConvolutedGenome ▴ 10
I dont think im confusing the two, is what I meant: I originally said that the “start” coordinate of every entry termed “transcript” under…
Comment: getting coding exon information from Ensembl API by Ram 38k
Your account has been suspended for bad behavior. I've re-opened the posts that you deleted because those posts belong to the community, no…
Comment: Can I use abundance from Tximport to compare the expression level of transcript by Ram 38k
No. I think you can compare average TPMs as long as you explicitly mention that anywhere you report metrics but don't average counts.
Comment: Manta and alignment name collision by Pierre Lindenbaum 153k
I wrote https://jvarkit.readthedocs.io/en/latest/SamRemoveDuplicatedNames/ to remove this kind of reads, but I'm not sure it's what you're …
Comment: getting coding exon information from Ensembl API by Nobody ▴ 30
can you delete my account please, because i can't do it by myself. Thank you
Comment: Java -xmx option does not limit memory usage in the ImputePipelinePlugin? by twrl8 • 0
Thank you very much! I will try using the singularity options. Thank you for that aswell. I will keep an eye on the docker hub for newer v…
Comment: Is there a site that takes a list of uniprot IDs/gene IDs as input and create ph by Pierre Lindenbaum 153k
ncbi blast a sequence accession vs the other ? then select the multiple sequence alignment view ?
Comment: Can I use abundance from Tximport to compare the expression level of transcript by aimanbarki ▴ 20
So can I average 6 replicates??
Comment: How can I easily remove overlapping transcripts, keeping only longest transcript by Juke34 7.7k
Don't use `--merge_loci` in your command line this was for AGAT version <1.0.0 (and only few scripts), now this is handled via the config.y…
Comment: getting coding exon information from Ensembl API by Ram 38k
> Because you just answer No we don't. I think you're confusing this professional forum contributed to by volunteers with a customer suppo…
Comment: Can I use abundance from Tximport to compare the expression level of transcript by Ram 38k
Oh, you can just use TPM to do that. Within sample comparison is a completely different (and much easier) game.
Comment: ClusterProfiler enrichKEGG – remove organism name in plots? by Sian • 0
Unfortunately yes, there does seem to be a problem with using the older version - when I came to do more analysis yesterday, the enrichKEGG…
Comment: getting coding exon information from Ensembl API by Nobody ▴ 30
Because you just answer when it's a stupid question or when I ask a lot of questions. This is for asking questions not for being judged by …
Comment: KM Plot for gene of interest (e.g. TP53) using TCGA-PAAD dataset by Manav • 0
Thanks, tried working with the dataset and workflow. It worked.
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