Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this month
all time
today
this week
this month
this year
446 results • Page
1 of 9
Sort: Views
Rank
Views
Votes
Replies
206
votes
58
replies
38k
views
31 follow
Forum:
Will Python Take The Place Of R?
r
statistics
python
biopython
updated 25 days ago by
Ram
38k • written 9.8 years ago by
Medhat
9.5k
20
votes
12
replies
37k
views
7 follow
Forum:
When To Use Sed Awk Over Perl Or Python
perl
python
awk
updated 20 days ago by
Ram
38k • written 9.2 years ago by
Medhat
9.5k
115
votes
35
replies
36k
views
20 follow
Forum:
Snakemake vs. Nextflow: strengths and weaknesses
snakemake
nextflow
Forum
updated 11 days ago by
e.r.zakiev
▴ 30 • written 5.8 years ago by
ropolocan
▴ 760
41
votes
17
replies
35k
views
15 follow
Forum:
List Of Genome Sequencing Centers/Institutes
genomics
institutes
updated 26 days ago by
Ram
38k • written 10.1 years ago by
Malachi Griffith
19k
21
votes
3
replies
31k
views
Forum:
Did You Know That Researchgate Is Spamming Your Colleagues (Perhaps Without Your Explicit Consent)?
researchgate
updated 26 days ago by
Ram
38k • written 10.1 years ago by
Obi Griffith
20k
126
votes
44
replies
27k
views
16 follow
Forum:
Trimming adapter sequences - is it necessary?
NGS
adapter
RNA-Seq
updated 12 days ago by
Ram
38k • written 6.5 years ago by
Lars
▴ 970
57
votes
19
replies
26k
views
6 follow
Forum:
Attention: Bowtie2 And Multiple Hits
next-gen
bowtie
mapping
updated 27 days ago by
Ram
38k • written 10.4 years ago by
David Langenberger
9.9k
151
votes
39
replies
22k
views
20 follow
Forum:
A Farewell To Bioinformatics
bioinformatics
updated 26 days ago by
Ram
38k • written 10.2 years ago by
Martin A Hansen
3.0k
262
votes
48
replies
20k
views
37 follow
Forum:
Bioinformatics courses, workshops or training
Workshop
Training
Courses
updated 23 days ago by
Lars
▴ 970 • written 7.9 years ago by
Deepak Tanwar
★ 4.2k
136
votes
41
replies
20k
views
20 follow
Forum:
Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
meta
updated 25 days ago by
Ram
38k • written 9.8 years ago by
Whetting
★ 1.6k
106
votes
23
replies
20k
views
16 follow
Forum:
How Did You Learn Good Practice In Bioinformatics/Computational Biology?
bioinformatics
updated 19 days ago by
Ram
38k • written 9.1 years ago by
epigene
▴ 570
65
votes
26
replies
18k
views
13 follow
Forum:
Macosx For Bioinformatics?
linux
updated 20 days ago by
Ram
38k • written 9.3 years ago by
Eric Normandeau
11k
36
votes
21
replies
16k
views
9 follow
Forum:
What Is Your Favorite Conserved Protein?
protein
conservation
updated 22 days ago by
Ram
38k • written 9.6 years ago by
Mary
11k
31
votes
13
replies
15k
views
8 follow
Forum:
Should I Pursue A Bioinformatics Msc?
career
updated 26 days ago by
Ram
38k • written 10.1 years ago by
biostepho
▴ 70
159
votes
38
replies
15k
views
22 follow
Forum:
Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
updated 26 days ago by
Ram
38k • written 10.0 years ago by
Istvan Albert
97k
93
votes
50
replies
14k
views
17 follow
Forum:
Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
personal-genomics
23andMe
updated 20 days ago by
Ram
38k • written 9.3 years ago by
Istvan Albert
97k
61
votes
11
replies
14k
views
9 follow
Forum:
Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
programming
updated 22 days ago by
Ram
38k • written 9.7 years ago by
Malachi Griffith
19k
42
votes
21
replies
14k
views
10 follow
Forum:
A Database Of Signatures Of Selection In The 1000 Genomes Dataset
1000genomes
human
selection
updated 18 days ago by
Ram
38k • written 9.1 years ago by
Giovanni M Dall'Olio
27k
57
votes
43
replies
14k
views
8 follow
Forum:
Best RNA-Seq aligner: A comparison of mapping tools
NGS
alignment
genome
RNA-Seq
sequence
updated 12 days ago by
Ram
38k • written 4.2 years ago by
David Langenberger
9.9k
19
votes
0
replies
13k
views
Forum:
Hadley Wickham of ggplot and RStudio uses this
uses-this
updated 13 days ago by
Ram
38k • written 8.4 years ago by
Istvan Albert
97k
20
votes
22
replies
12k
views
11 follow
Forum:
Nextseq for analysts
basespace
casava
bcl2fastq
nextseq
updated 15 days ago by
Ram
38k • written 8.7 years ago by
Madelaine Gogol
5.3k
8
votes
2
replies
12k
views
Forum:
List of popular bioinformatics software/tools
software
updated 13 days ago by
Ram
38k • written 8.5 years ago by
JorgeGonzalez
▴ 20
6
votes
12
replies
12k
views
11 follow
Forum:
Online/remote/distance learning/ - partime/fulltime - PhD, Bioinformatics in USA
PhD
university
updated 13 days ago by
Ram
38k • written 6.5 years ago by
ankur.ganveer
▴ 20
105
votes
46
replies
11k
views
13 follow
Forum:
Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
epigenetics
updated 22 days ago by
Ram
38k • written 9.6 years ago by
ugly.betty77
★ 1.1k
60
votes
14
replies
11k
views
14 follow
Forum:
Interesting bioinformatics blogs (2017 edition)
blogs
updated 25 days ago by
Ram
38k • written 6.0 years ago by
WouterDeCoster
47k
32
votes
13
replies
10k
views
10 follow
Forum:
What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
genomics
phd
updated 29 days ago by
Ram
38k • written 10.6 years ago by
sentausa
▴ 650
12
votes
8
replies
9.8k
views
8 follow
Forum:
"Separate enrichment analysis of pathways for up- and downregulated genes"
enrichmnet-analysis
updated 15 days ago by
Ram
38k • written 8.9 years ago by
Woa
★ 2.9k
15
votes
14
replies
9.7k
views
6 follow
Forum:
How Should I Go About Preparing For My Bioinformatics Phd Admissions Interview?
phd
updated 19 days ago by
Ram
38k • written 9.1 years ago by
kandoigaurav
▴ 150
3
votes
2
replies
9.5k
views
Forum:
How To Provide Reference Sequence Dictionary To Reordersam?
picard
gatk
updated 20 days ago by
Ram
38k • written 9.3 years ago by
Charles Warden
8.2k
0
votes
2
replies
9.4k
views
Forum:
Secondary Structure Prediction software RNA/DNA
dna
secondary-structure
software
rna
updated 13 days ago by
Ram
38k • written 8.4 years ago by
14134125465346445
★ 3.6k
24
votes
15
replies
9.3k
views
11 follow
Forum:
PhD in bioinformatics or biostatistics as a wet-lab scientist?
biology
statistics
PhD
updated 13 days ago by
Ram
38k • written 8.6 years ago by
benjamin.hebisch
▴ 70
10
votes
6
replies
9.3k
views
Forum:
Is it worth getting a Masters in Bioinformatics, financially?
career
updated 15 days ago by
Ram
38k • written 8.8 years ago by
n00514450
▴ 20
50
votes
8
replies
9.0k
views
6 follow
Forum:
Encode Commentary From Dan Graur
encode
updated 26 days ago by
Ram
38k • written 10.1 years ago by
Damian Kao
16k
5
votes
4
replies
8.9k
views
Forum:
List of unresolved problems in Computational Biology / Bioinformatics?
computational-biology
problems
updated 7 days ago by
Ram
38k • written 8.2 years ago by
Samuel Lampa
★ 1.3k
11
votes
10
replies
8.6k
views
Forum:
Looking For Bioinformatics Job In Germany
bioinformatician
career
updated 15 days ago by
Ram
38k • written 9.0 years ago by
jack
▴ 500
12
votes
4
replies
8.2k
views
Forum:
Bioinformatics/Biotech Firms In India
career
updated 29 days ago by
Ram
38k • written 10.9 years ago by
aj123
▴ 100
22
votes
14
replies
8.0k
views
6 follow
Forum:
Too late to switch to Bioinformatics?
education
career
updated 15 days ago by
Ram
38k • written 8.8 years ago by
taneuroth
▴ 30
10
votes
3
replies
8.0k
views
Forum:
Got Multiple Cpus? Activate Them With Gnu Parallel
parallel
command-line
ngs
updated 20 days ago by
Ram
38k • written 9.3 years ago by
ole.tange
★ 4.3k
99
votes
21
replies
7.9k
views
14 follow
Forum:
How Has Bioinformatics Improved Over Time?
bioinformatics
updated 26 days ago by
Ram
38k • written 10.1 years ago by
Kate
▴ 370
9
votes
19
replies
7.9k
views
Forum:
Careful!! Velvet Generates Different Assemblies From The Same Input Data And Same Input Parameters With Openmp Enabled.
velvet
genome
updated 20 days ago by
Ram
38k • written 9.3 years ago by
Rahul Sharma
▴ 650
9
votes
4
replies
7.8k
views
Forum:
Biofinysics - How does bowtie2 assign MAPQ scores?
alignment
bowtie2
updated 13 days ago by
Ram
38k • written 8.6 years ago by
Philipp Bayer
7.7k
46
votes
9
replies
7.8k
views
10 follow
Forum:
Bioinformatics For Clinicians - What To Teach Them?
education
updated 20 days ago by
Ram
38k • written 9.3 years ago by
j
▴ 140
13
votes
5
replies
7.8k
views
Forum:
Funding Opportunities In Bioinformatics
grant
updated 26 days ago by
Ram
38k • written 10.1 years ago by
Obi Griffith
20k
64
votes
8
replies
7.8k
views
7 follow
Forum:
Isaac Asimov Accurately Predicts Woes Of Bioinformatician
bioinformatician
updated 25 days ago by
Ram
38k • written 9.9 years ago by
Obi Griffith
20k
26
votes
0
replies
7.7k
views
Forum:
Heng Li of BWA and Samtools uses this
uses-this
updated 13 days ago by
Ram
38k • written 8.5 years ago by
Istvan Albert
97k
5
votes
4
replies
7.3k
views
Forum:
Masters In Bioinformatics Vs Masters In Information Technology (Computer Science)
career
updated 16 days ago by
Ram
38k • written 9.0 years ago by
jasontran600
• 0
5
votes
6
replies
7.3k
views
Forum:
Msc Bioinformatics Project Ideas
project
updated 29 days ago by
Ram
38k • written 10.9 years ago by
paulawambui
▴ 50
47
votes
37
replies
7.3k
views
12 follow
Forum:
The Organisation Of Really Contrived Acronyms (Orca)
acronyms
updated 22 days ago by
Ram
38k • written 9.6 years ago by
Niallhaslam
2.3k
60
votes
28
replies
7.2k
views
27 follow
Forum:
Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 13 days ago by
Ram
38k • written 8.5 years ago by
Istvan Albert
97k
34
votes
19
replies
7.1k
views
12 follow
Forum:
Programming Language In Bioinformatics
perl
python
updated 26 days ago by
Ram
38k • written 9.9 years ago by
AndreiR
▴ 260
446 results • Page
1 of 9
Recent Votes
Answer: Splitting a Nebulosa (Seurat wrapper) visualization by treatment group
Answer: API REST ALINGMENT
Comment: Can I use abundance from Tximport to compare the expression level of transcript
Comment: getting coding exon information from Ensembl API
C: How to install TMAP
If there is a way to link two gosling html components in two <div>s.
A: Using GATK's HaplotypeCaller or Mutect2 for somatic cancer samples with no norma
Recent Locations •
All
United Kingdom,
just now
India,
2 minutes ago
Canada,
5 minutes ago
Bologna,
6 minutes ago
United States,
6 minutes ago
Sweden,
8 minutes ago
Germany,
8 minutes ago
Recent Awards •
All
Popular Question
to
Maxine
• 0
Scholar
to
Trivas
▴ 680
Teacher
to
Mensur Dlakic
★ 23k
Popular Question
to
Manav
• 0
Scholar
to
Christian
▴ 20
Scholar
to
GenoMax
127k
Popular Question
to
Omics data mining
▴ 210
Recent Replies
Answer: Multiple samples and species with kallisto bus(tools)
by
dsull
★ 4.0k
Hello! There are two questions here: 1) Mixed species, and 2) Multiple samples Let's start with question 1: You don't really know what c…
Comment: What is exactly meant by "GENCODE TSS"?
by
ConvolutedGenome
▴ 10
I dont think im confusing the two, is what I meant: I originally said that the “start” coordinate of every entry termed “transcript” under…
Comment: getting coding exon information from Ensembl API
by
Ram
38k
Your account has been suspended for bad behavior. I've re-opened the posts that you deleted because those posts belong to the community, no…
Comment: Can I use abundance from Tximport to compare the expression level of transcript
by
Ram
38k
No. I think you can compare average TPMs as long as you explicitly mention that anywhere you report metrics but don't average counts.
Comment: Manta and alignment name collision
by
Pierre Lindenbaum
153k
I wrote https://jvarkit.readthedocs.io/en/latest/SamRemoveDuplicatedNames/ to remove this kind of reads, but I'm not sure it's what you're …
Comment: getting coding exon information from Ensembl API
by
Nobody
▴ 30
can you delete my account please, because i can't do it by myself. Thank you
Comment: Java -xmx option does not limit memory usage in the ImputePipelinePlugin?
by
twrl8
• 0
Thank you very much! I will try using the singularity options. Thank you for that aswell. I will keep an eye on the docker hub for newer v…
Comment: Is there a site that takes a list of uniprot IDs/gene IDs as input and create ph
by
Pierre Lindenbaum
153k
ncbi blast a sequence accession vs the other ? then select the multiple sequence alignment view ?
Comment: Can I use abundance from Tximport to compare the expression level of transcript
by
aimanbarki
▴ 20
So can I average 6 replicates??
Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
by
Juke34
7.7k
Don't use `--merge_loci` in your command line this was for AGAT version <1.0.0 (and only few scripts), now this is handled via the config.y…
Comment: getting coding exon information from Ensembl API
by
Ram
38k
> Because you just answer No we don't. I think you're confusing this professional forum contributed to by volunteers with a customer suppo…
Comment: Can I use abundance from Tximport to compare the expression level of transcript
by
Ram
38k
Oh, you can just use TPM to do that. Within sample comparison is a completely different (and much easier) game.
Comment: ClusterProfiler enrichKEGG – remove organism name in plots?
by
Sian
• 0
Unfortunately yes, there does seem to be a problem with using the older version - when I came to do more analysis yesterday, the enrichKEGG…
Comment: getting coding exon information from Ensembl API
by
Nobody
▴ 30
Because you just answer when it's a stupid question or when I ask a lot of questions. This is for asking questions not for being judged by …
Comment: KM Plot for gene of interest (e.g. TP53) using TCGA-PAAD dataset
by
Manav
• 0
Thanks, tried working with the dataset and workflow. It worked.
Traffic: 2910 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6