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171 results • Page
4 of 4
Sort: Views
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Views
Votes
Replies
0
votes
0
replies
100
views
Use of annotation of integrated Seurat object in single sample
Seurat
4 days ago by
Bine
▴ 60
0
votes
0
replies
98
views
Tassel 5 GBS: GBSSeqToTagDBPlugin producing empty database
GBS
Tassel5
4 days ago by
meck
• 0
0
votes
0
replies
96
views
Successfully identified and Masked rpeats using RM. What Next?
sequence
annotation
repeatmasker
illumina
assembly
4 days ago by
Vijith
▴ 30
0
votes
0
replies
96
views
Combining Methylation Microarray data from different platforms
Microarray
DNA
EPIC
450K
Methylation
4 days ago by
James
▴ 10
0
votes
0
replies
91
views
Seurat V5 integration
Seurat
samples
integration
combine
1 day ago by
starswillfade
▴ 10
0
votes
0
replies
89
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
1 day ago by
DGTool
• 0
0
votes
0
replies
82
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
1 day ago by
Christopher
• 0
0
votes
0
replies
80
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
1 day ago by
KHURRAM SHAHZAD
• 0
0
votes
0
replies
76
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
1 day ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
66
views
How to implement an IGV to streamlit app?
python
streamlit
igv
11 hours ago by
avigail.shnaider
• 0
0
votes
1
reply
61
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome
16S
DESeq2
updated 1 hour ago by
andres.firrincieli
3.6k • written 6 hours ago by
Antonio
• 0
0
votes
0
replies
59
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 6 hours ago by
Ram
43k • written 8 hours ago by
MICOS
• 0
0
votes
0
replies
52
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
5 hours ago by
Biostar
2.7k
0
votes
0
replies
51
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 6 hours ago by
Ram
43k • written 6 hours ago by
sidrah.maryam
▴ 50
0
votes
0
replies
49
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 9 hours ago by
Pierre Lindenbaum
161k • written 9 hours ago by
sarumonsus
• 0
0
votes
0
replies
41
views
Normalizing AMR gene count data
abundance
RGI
updated 6 hours ago by
Ram
43k • written 7 hours ago by
arshad1292
▴ 100
0
votes
0
replies
38
views
vdjtools
vdjtools
4 hours ago by
yueli7
▴ 250
0
votes
0
replies
37
views
Cox Model with interaction item interpretation
Cox
3 hours ago by
Bine
▴ 60
0
votes
0
replies
33
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
3 hours ago by
MAPK2
▴ 40
0
votes
0
replies
29
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
3 hours ago by
Javier
• 0
0
votes
0
replies
13
views
Applying the metacell2 algorithm using python
single-cell
scanpy
cells
meta
python
1 hour ago by
JACKY
▴ 140
171 results • Page
4 of 4
Recent Votes
Answer: Gene ontology and homologs
Comment: anRichment is missing
Comment: Gene Specific coverage from WGS data
Comment: Gene Specific coverage from WGS data
Comment: High Malat-1 expression in single cell data
A: Meme-Tools: Bit score
Meme-Tools: Bit score
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bhumm
▴ 140
Teacher
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4.6k
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Recent Replies
Comment: How to access TCGA samples that were treated with a specific drug?
by
Qroid
▴ 40
Thank you. Maybe it's best to confirm with the authors about how they're getting responder/non-responder labels. I'll do that now.
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
Chris Dean
▴ 390
If you sequenced a short hypervariable region, most of your sequence reads will not be able to be assigned to the species level. One possi…
Comment: anRichment is missing
by
GenoMax
142k
Consider emailing Dr. Horvath about this. Until enough people make him aware of this issue WGCNA "problem" is unlikely to get fixed.
Comment: anRichment is missing
by
Tatyana
• 0
Unfortunately, there are only tutorials and codes for tutorials for WGCNA, not installation files for any their packages... :(
Comment: anRichment is missing
by
GenoMax
142k
See this link for the WGCNA documentation and code from Peter Langfelder : https://bioinformatics.stackexchange.com/questions/21885/where-t…
Comment: anRichment is missing
by
Tatyana
• 0
The problem is back, Horwath's lab web is down again. Is it possible to get anRichment istallation file somewhere? (The greater problem is …
Comment: 16S rRNA microbiome differential abundance analysis with DESeq2 finds same micro
by
andres.firrincieli
3.6k
1. Maribaculaceae is a family not a genus 2. Who said that ASV with the same taxonomic classification must have the same behaviour? 3. With…
Comment: Question regarding WGCNA
by
andres.firrincieli
3.6k
the within-group variability is so small that these look like technical replicates rather than independent biological replicates
Answer: Gene ontology and homologs
by
geneontologyhelp
▴ 400
No. Homology is defined as shared common ancestry. Two genes that take part in the same biological process may not have the same functio…
Answer: error in R code
by
Matthias Zepper
4.6k
I quickly googled [the source code of that function][1], and the error is triggered by this condition: if(length(wn) < 1 || !is.whol…
Comment: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
by
kalavattam
▴ 190
Thanks for the explanation. I noticed and corrected a typo in which "*read* reverse strand" initially read as "*mate* reverse strand" in t…
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
sovrappensiero
▴ 90
It's a commercial product, a *Staphylococcus hominis* genome. This species is not found in the DADA2 results, so I guess DADA2 is not ident…
Comment: Question regarding WGCNA
by
Ram
43k
Plots are incomplete without legends. Please share the complete plot with mappings for shape and color.
Comment: Quetion regarding WGCNA
by
deepak
• 0
Thank you for your reply andres.firrincieli. I have attached the PCA plot of the expression data used in the WGCNA. ![enter imag…
Comment: Design matrix Differential expression analysis
by
SHN
▴ 40
Got it, thank you for your response. SN
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