0
votes
0
replies
91
views
0
votes
0
replies
117
views
0
votes
0
replies
90
views
0
votes
0
replies
94
views
0
votes
0
replies
82
views
0
votes
0
replies
89
views
1
vote
0
replies
185
views
1 day ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
93
views
0
votes
0
replies
89
views
4
votes
0
replies
131
views
0
votes
0
replies
95
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
120
views
0
votes
0
replies
96
views
updated 4 days ago by
GenoMax
142k
•
written 4 days ago by
aliraza3119
•
0
0
votes
0
replies
113
views
4 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
58
views
15 hours ago by
Amos Bairoch
▴
120
0
votes
0
replies
75
views
0
votes
0
replies
99
views
0
votes
0
replies
9
views
30 minutes ago by
SHN
▴
40
0
votes
0
replies
57
views
0
votes
0
replies
208
views
0
votes
0
replies
45
views
0
votes
0
replies
41
views
8 hours ago by
marco.barr
▴
90
0
votes
0
replies
44
views
0
votes
0
replies
8
views
14 minutes ago by
deepak180001
•
0
0
votes
0
replies
36
views
0
votes
0
replies
44
views
0
votes
0
replies
138
views
0
votes
0
replies
37
views
6 hours ago by
Javier
•
0
0
votes
0
replies
44
views
0
votes
0
replies
143
views
6 days ago by
Chris
▴
260
0
votes
0
replies
112
views
0
votes
0
replies
130
views
3 days ago by
Jacob
•
0
0
votes
0
replies
109
views
0
votes
0
replies
127
views
Recent Votes
Recent Locations •
All
Cambridge, MA, just now
College Station, TX, 1 minute ago
United States, 1 minute ago
United States, 2 minutes ago
Canada, 2 minutes ago
San Francisco, 4 minutes ago
Mt. Pleasant, MI, 5 minutes ago
Recent Awards •
All
Popular Question to
SHN
▴
40
Popular Question to
Rob
▴
170
Popular Question to
curious
▴
750
Popular Question to
M.
▴
30
Student to
carolofharvest
▴
30
Commentator to
e.r.zakiev
▴
210
Recent Replies
Answer: visualize GSEA
by
bk11
★
2.4k
I have made some edits in your code basically changing the position of text and commented out the line `data$text_pos <- ifelse(data$NES > …
Comment: Differential Expression Analysis using DESeq2 in R
by
swbarnes2
14k
Pictures of code are useless. You were told to paste the code and use the 0101 button. Can you explain why you decided not to do that?
If…
Comment: Differential Expression Analysis using DESeq2 in R
by
Erina
•
0
![Here is the code I am using for the analysis][1]
[1]: /media/images/8a511904-6ae8-47f5-b647-ee15b02b
Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
by
swbarnes2
14k
In paired end sequencing, every read has a mate, and the flags all together tell you not only what is up with the read you are looking at, …
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Mbofire
•
0
I need assistance don't know what to do next after signing up
Comment: Easy way to find out which allele is minor allele from bed file?
by
curious
▴
750
According to the link:
"When *generating* such filesets, PLINK 1.x defaults to swapping the alleles whenever A1's frequency is above (not …
Comment: TaxID mapping file
by
GenoMax
142k
nodesDB file should have been installed if you had used "Install" script for `blobtools` according to : https://blobtools.readme.io/docs/ta…
Comment: Parametric or non-parametric tests for qPCR significance testing between treatme
by
e.r.zakiev
▴
210
obviously if the values are really sampled from a (quasi) normally-distributed values, then n doesn't matter, he could use t-test even with…
Comment: Converting CRAM to FastQ
by
GenoMax
142k
You can use any reference that you like at this point. Since you are planning to use GATK, you can get their version from the resource bund…
Comment: Converting CRAM to FastQ
by
Maverick
▴
10
![enter image description here][1]I was able to get my fastq files. I can see that my reference files are cached in a hts-ref directory but…
Comment: Differential Expression Analysis using DESeq2 in R
by
swbarnes2
14k
Okay, that shows us the problem, but not what we need to solve it.
But, for instance, are you sure that period after the sample name shou…
Comment: Easy way to find out which allele is minor allele from bed file?
by
bk11
★
2.4k
In the case of MAF = 0.5, I think A1 is still the minor allele. You can check the discussion in this [link][1].
[1]: https://groups.goo…
Comment: Easy way to find out which allele is minor allele from bed file?
by
curious
▴
750
Yes, but I think the problem is what to do when MAF = 0.5
Answer: Easy way to find out which allele is minor allele from bed file?
by
bk11
★
2.4k
In Plink, A1 is usually a minor allele and A2 a major allele.
.frq (basic allele frequency report)
Produced by --freq.
…
Traffic: 1852 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6