4
votes
7
replies
462
views
1
vote
4
replies
328
views
1
vote
1
reply
127
views
updated 23 hours ago by
Ram
43k
•
written 1 day ago by
kilcdincer
▴
10
0
votes
0
replies
65
views
0
votes
1
reply
111
views
0
votes
2
replies
153
views
0
votes
0
replies
50
views
9 hours ago by
Shaimaa Gamal
▴
10
0
votes
3
replies
97
views
0
votes
1
reply
88
views
0
votes
1
reply
98
views
0
votes
1
reply
92
views
0
votes
0
replies
38
views
0
votes
0
replies
46
views
updated 2 hours ago by
ATpoint
82k
•
written 3 hours ago by
yura.grabovska
▴
70
0
votes
0
replies
23
views
0
votes
0
replies
17
views
0
votes
1
reply
27
views
1 hour ago by
asalimih
▴
60
0
votes
1
reply
29
views
updated 32 minutes ago by
yura.grabovska
▴
70
•
written 1 hour ago by
ev97
▴
20
0
votes
2
replies
21
views
0
votes
0
replies
1
view
just now by
Rodolfo Adrián
•
0
0
votes
1
reply
137
views
0
votes
0
replies
61
views
15 hours ago by
brunofelicianodeomena
•
0
Recent Votes
Recent Locations •
All
Bologna, just now
United States, 1 minute ago
United States, 1 minute ago
United States, 3 minutes ago
Brazil, 3 minutes ago
Russia, 4 minutes ago
WCIP | Glasgow | UK, 7 minutes ago
Recent Awards •
All
Scholar to
rpolicastro
13k
Popular Question to
Amr
▴
160
Popular Question to
asalimih
▴
60
Popular Question to
nd48
▴
20
Popular Question to
biology_inform
▴
50
Popular Question to
Joe
21k
Recent Replies
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Did you remeber to unzip/untar the `nt` preformatted files that you downloaded?
Comment: Genotyping sites with N in reference genome
by
shpak.max
▴
50
Just to clarify, I have set additional sites in the reference genome to 'N', which means (based on your statement) that these will not be g…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
Pierre Lindenbaum
161k
see https://www.biostars.org/p/9496674/
<!-- when i runed blastn(version 2.15) and nt database(latest version). I used aspera to download…
Answer: Genotyping sites with N in reference genome
by
Pierre Lindenbaum
161k
> Does UnifiedGenotyper skip/ignore sites where the reference genotype is N
yes. The variant is in YOUR data, not in the reference where '…
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
by
yura.grabovska
▴
70
Do you have samples that should in theory have a good degree over overlap in terms of cell types across the two sequencing types?
I would …
Comment: Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
by
asalimih
▴
60
I found out that vep is only checking the GT field therefore assigning HOM to the Zygosity. Therefore the problem should be from deepvarian…
Comment: Add stats to boxplot in R
by
Lélé
•
0
To remove "Kruskall Wallis" you can try adding the argument label="p" or label = "p.signif" which displays the p-value or *** like this:
…
Answer: Sequencing Depth (Read Depth) Calculations
by
GenoMax
142k
You could also use `pandepth` ([**LINK**][1]) or `mosdepth` ([**LINK**][2]) as well. These will allow you to be flexible about windowed cov…
Comment: Sequencing Depth (Read Depth) Calculations
by
Pierre Lindenbaum
161k
it looks looks ok to me.
<!-- This cmd works and gives me 40.5235, I was wondering whether this cmd is right or wrong, and does anyone hav…
Comment: Add stats to boxplot in R
by
Ghada
•
0
Great. thats work. Do you know how can I remove the kruskall-Wallis name from the plot? Also I would like to draw a line under the kruskall…
Comment: Using ggplotly in R
by
jared.andrews07
★
16k
Again, this is not particularly difficult to do with [plotly itself](https://plotly.com/r/line-and-scatter/#adding-color-and-size-mapping) …
Comment: Duplicated reads (IDs) from nanopore sequencing
by
GenoMax
142k
If you only have supplementary alignments then they may be caused by reasons mentioned here --> https://www.biostars.org/p/308853/ I did no…
Comment: Cannot install bwa-mem2 via conda
by
Pierre Lindenbaum
161k
> Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the c…
Answer: Cannot install bwa-mem2 via conda
by
Istvan Albert
100k
The problem is caused by running the ARM-based conda. Bioinformatics software is compiled for Intel based CPUs only.
Uninstall that versio…
Comment: Duplicated reads (IDs) from nanopore sequencing
by
marco.barr
▴
110
[https://www.biostars.org/p/9559284/][1] you could try this
[1]: https://www.biostars.org/p/9559284/
Traffic: 2572 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6