15 hours ago by
andres.firrincieli
3.2k
0
votes
2
replies
2.7k
views
2
votes
1
reply
2.1k
views
updated 12 hours ago by
Ram
38k
•
written 4.6 years ago by
wonseok.cchoi
•
0
0
votes
2
replies
1.4k
views
updated 46 minutes ago by
afei
•
0
•
written 5.1 years ago by
serpalma.v
▴
70
1
vote
3
replies
456
views
updated 5 hours ago by
lethalfang
▴
90
•
written 4 months ago by
ashenflower
▴
20
0
votes
6
replies
378
views
2
votes
4
replies
360
views
0
votes
2
replies
230
views
14 hours ago by
animeshizik
•
0
1
vote
4
replies
223
views
1
vote
2
replies
169
views
1
vote
4
replies
165
views
1
vote
3
replies
149
views
updated 19 hours ago by
Pierre Lindenbaum
153k
•
written 20 hours ago by
qstefano
▴
20
2
votes
2
replies
135
views
0
votes
0
replies
115
views
16 hours ago by
dzisis1986
▴
60
0
votes
1
reply
113
views
1
vote
2
replies
104
views
0
votes
0
replies
100
views
0
votes
2
replies
98
views
8 hours ago by
chi.delta
▴
40
3
votes
1
reply
89
views
updated 9 hours ago by
Ram
38k
•
written 11 hours ago by
e.r.zakiev
▴
30
1
vote
1
reply
82
views
0
votes
0
replies
79
views
22 hours ago by
hellokwmin
•
0
1
vote
1
reply
76
views
0
votes
0
replies
57
views
12 hours ago by
Maria17
▴
10
0
votes
0
replies
56
views
8 hours ago by
cogen859
•
0
0
votes
0
replies
53
views
0
votes
0
replies
52
views
0
votes
0
replies
52
views
12 hours ago by
hla_help
•
0
0
votes
0
replies
10
views
Recent Votes
Recent Locations •
All
Palo Alto, CA, USA, 1 minute ago
South Korea, 2 minutes ago
United States, 11 minutes ago
State College, PA, Penn State, 17 minutes ago
United States, 17 minutes ago
United States, 17 minutes ago
Indonesia, 18 minutes ago
Recent Awards •
All
Popular Question to
Bogdan
★
1.3k
Popular Question to
pavelasquezv
▴
50
Popular Question to
Anand Rao
▴
550
Scholar to
andres.firrincieli
3.2k
Popular Question to
chaco001
▴
10
Recent Replies
Answer: Align miRNA library (small RNA-seq) without trimming
by
Ming Tommy Tang
★
2.9k
bowtie 1 is good for short read < 50bp, how long is your read? bowtie2 is better for reads > 50 bp
Comment: Differences in RNAseq Variant Calling and Allele Specific Expression
by
afei
•
0
Hi!
I'm also confused by this. And the site (https://gatkforums.broadinstitute.org/gatk/categories/gatk-support-forum) is closed. Have you …
Comment: Variant caller reports a homozygous variant genotype, but more reads are associa
by
rebeliscu
▴
50
Indeed, I thought the quality might be a factor. Still, given the information, it seems odd to me that that call was made.
Thanks for you…
Answer: How can I use bcftools mpileup or an alternative to find ALL variants without an
by
cfos4698
▴
730
To generate a VCF file one would normally pipe the input of an `mpileup` command into an actual `call` command. For example:
```
bcftools …
Answer: PTM-aware protein folding / docking
by
Mensur Dlakic
★
23k
Your assumption is correct - AlphaFold pTM has nothing to do with post-translational modifications. See [**here**][1].
Not to discourage…
Answer: Admixture cv error
by
Declan
•
0
I had this issue today and was able to resolve it by changing the random seed Admixture uses by adding `-s time` (which sets the random see…
Answer: Total No of Genes of GENCODE Release 43
by
ahmad
•
0
The following is the correct code
gtf_43<-rtracklayer::import('gencode.v43.primary_assembly.annotation.gtf')
dtgtf_43<-data.frame(gtf_4…
Comment: Total No of Genes of GENCODE Release 43
by
ahmad
•
0
Hello,
thanks for replying, by mistake I paste the wrong code. the following is the corrected
gtf_43<-rtracklayer::import('gencode.v43…
Comment: Kallisto bustools for scRNA-seq
by
dsull
★
4.0k
I have no idea what that is besides a bunch of jumbled sequences. You'll need look up the structure of the reads / library from wherever yo…
Comment: Aberrant splicing in bulk RNAseq
by
dsull
★
4.0k
First thing: kallisto cannot interface with UMI-tools (kallisto doesn't use read headers and therefore you're stuck with "the kallisto way"…
Comment: Using Copy Number Alterations detected in other studies for the same tumor cell
by
lethalfang
▴
90
There is some somatic SV study on these HCC1395: https://doi.org/10.1186/s13059-022-02816-6.
There is also a CNA preprint from years ago b…
Comment: Somatic truth set
by
lethalfang
▴
90
Just in case things are hard to find, for the WGS/WES, these are the data (what the file names mean: https://sites.google.com/view/seqc2/ho…
Comment: How to get subset of a Seurat object based on metadata?
by
jv
★
1.0k
Hmm, not sure why `subset` doesn't match to '0:CD8 T cell' but maybe it's the ":"?
An alternative option is the following:
```
idx <- whi…
Comment: GO enrichment analysis
by
Jeremy
▴
780
g:Profiler has an Arabidopsis option:
[g:Profiler][1]
[1]: https://biit.cs.ut.ee/gprofiler/gost
Answer: Any tips in landing a bioinformatic job?
by
Carambakaracho
★
3.2k
The first job is a nightmare and you will need some luck. I understand you're looking for an industry offering. Unfortunately I've worked o…
Traffic: 1588 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6