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dario.garvan
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written 7.2 years ago by
d-cameron
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Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
written 8.3 years ago by
dvelmeshev
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6 days ago by
vytarasov
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12 days ago by
Ibrahim Tanyalcin
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updated 29 days ago by
Ram
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written 7.1 years ago by
alexis.vandenbon
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Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
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This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
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@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
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Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips.
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You need to change your data table into a 'long' format. You can do something like this-
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I use Trim Galore which automatically recognizes adaptors.
https://github.com/FelixKrueger/TrimGalore
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There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
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Please check out [in this link.][1]
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[Here](https://www.biostars.org/p/9544689/) is a forum post that may answer your question.
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Second what is said above, ensembl_id is the unique identifier.
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It doesn't work. The annotation labels are still in a default fontsize. I cant find a way to set the fontsize.
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Yes. The solution to most things with ComplexHeatmap is to play around with parameters.
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I do not want to re-annotate the genome. I ask if there is a way to extract the region aligned with the mauve, in .gbk format.
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