1
vote
0
replies
608
views
2
votes
1
reply
800
views
2
votes
0
replies
655
views
3
votes
0
replies
711
views
3
votes
1
reply
892
views
3
votes
0
replies
696
views
2
votes
0
replies
541
views
3
votes
0
replies
614
views
2
votes
1
reply
640
views
updated 17 months ago by
Istvan Albert
100k
•
written 17 months ago by
Biostar
2.8k
2
votes
0
replies
548
views
7
votes
1
reply
690
views
3
votes
0
replies
577
views
2
votes
0
replies
644
views
4
votes
1
reply
725
views
2
votes
0
replies
630
views
4
votes
0
replies
621
views
1
vote
0
replies
597
views
3
votes
0
replies
579
views
1
vote
0
replies
577
views
1
vote
0
replies
671
views
1
vote
0
replies
585
views
2
votes
0
replies
558
views
2
votes
0
replies
542
views
1
vote
0
replies
573
views
2
votes
0
replies
572
views
2
votes
0
replies
633
views
3
votes
0
replies
652
views
updated 21 months ago by
Istvan Albert
100k
•
written 21 months ago by
Biostar
2.8k
1
vote
0
replies
640
views
1
vote
0
replies
534
views
1
vote
0
replies
566
views
3
votes
0
replies
580
views
1
vote
0
replies
610
views
1
vote
0
replies
613
views
3
votes
0
replies
651
views
3
votes
0
replies
619
views
2
votes
0
replies
666
views
5
votes
0
replies
717
views
1
vote
0
replies
565
views
2
votes
2
replies
802
views
updated 2.0 years ago by
Istvan Albert
100k
•
written 2.0 years ago by
Biostar
2.8k
1
vote
0
replies
540
views
3
votes
0
replies
587
views
2
votes
0
replies
551
views
3
votes
0
replies
597
views
1
vote
0
replies
565
views
2
votes
1
reply
712
views
2
votes
0
replies
587
views
1
vote
0
replies
500
views
2
votes
0
replies
547
views
1
vote
0
replies
567
views
2
votes
1
reply
666
views
Recent Votes
Recent Locations •
All
Australia, just now
Quaid-i-Azam University, just now
United States, 4 minutes ago
USA, 8 minutes ago
United States, 11 minutes ago
Dublin, Ireland, 12 minutes ago
Brazil, 15 minutes ago
Recent Awards •
All
Scholar to
ramiro.barrantes
•
0
Popular Question to
AshleeThomson
▴
80
Popular Question to
vk
▴
10
Popular Question to
Chironex
▴
40
Scholar to
rpolicastro
13k
Recent Replies
Comment: How to extract cells of different species after mapping with combined genome?
by
GenoMax
142k
You have used the tag `snRNAseq`. I am not familiar with singleron tech but if you have sequence data you may be able to use `xenome` or `b…
Comment: bbmerge (bbmap) ~ error with insert size file output
by
GenoMax
142k
It may be best to go back to the original data and then do `bbmerge.sh` on it to get original insert size estimates (before any operations …
Comment: bbmerge (bbmap) ~ error with insert size file output
by
chrisk
•
0
Hi Brian,
Thank you and apologies for the extra future revision works.
Out of curiosity we disabled neural networks 'nn=f' and the file o…
Comment: bbmerge (bbmap) ~ error with insert size file output
by
chrisk
•
0
Hi Genomax,
This is the thread:
https://www.biostars.org/p/9582467/
Cheers,
Chris
Comment: bbmerge (bbmap) ~ error with insert size file output
by
Brian Bushnell
20k
Ah, this is a little embarrassing; those are the vectors for the neural network. I overloaded a field that was being used for the insert s…
Comment: Annotating file using bcftools
by
kl
▴
10
Thanks - I corrected it. It doesn't seem to annotate. I converted to binary after which is what is shown below. It is not the output I want…
Comment: Filtering VCF files based on VAF giving incorrect results
by
Arton
▴
10
These are valid questions. Does your code address the concerns you've raised? From what I understand, FilterVcf is primarily designed for h…
Answer: Calculate allelic frequency from VEP output vcf file
by
ramiro.barrantes
•
0
Found the answer here!!
https://github.com/Illumina/strelka/blob/master/docs/userGuide/README.md#somatic
Although this leads to a str…
Comment: Using VEP annotation output as the input for a second VEP annotation
by
Ram
43k
That's not a valid reason to delete the post. If that information was sensitive, posting it here was a mistake in the first place. I don't …
Answer: In one PCA plot, can I calculate the percentage of different factors that contri
by
marco.barr
▴
120
Hi, regardless of how you generated the data whether with DESeq2 or other pipeline, your differential expression matrix can be used as inpu…
Comment: Filtering VCF files based on VAF giving incorrect results
by
Pierre Lindenbaum
161k
> Do you think my commands were correct?
I'm not familiar enough with this bcftools syntax.
but what if there is no AD, what if both…
Answer: How can you *consistently* download BioProject IDs from NCBI's BioSample databas
by
Ash
▴
10
I know this was asked several years ago, but finding this post helped me solve my own problem and in the process I solved this one too.
…
Answer: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
swbarnes2
14k
Would Parkinson's be expected to have an effect on blood cells? Neurons, sure, but blood cells?
Comment: Doubt about the process of annotation, detection, identification and classificat
by
MarcosCosta
•
0
Thank you very much, you've helped me a lot.
Could you suggest a book or article that offers a complete explanation of these processes?
Traffic: 1980 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6