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News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
29 days ago by David Langenberger 11k
12
votes
2
replies
476
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
24 days ago by David Langenberger 11k
1
vote
1
reply
995
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 22 hours ago by ▴ 40 • written 14 months ago by ★ 1.2k
0
votes
1
reply
280
views
News: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq variant-calling RNA-seq illumina transcriptomics
4 days ago by David Langenberger 11k
2
votes
0
replies
135
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 23 days ago by 43k • written 23 days ago by ▴ 70
0
votes
0
replies
143
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 13 days ago by 43k • written 14 days ago by ★ 2.5k
0
votes
0
replies
210
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 16 days ago by 43k • written 16 days ago by ★ 2.5k
0
votes
0
replies
155
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 19 days ago by 43k • written 19 days ago by ▴ 380
2
votes
0
replies
126
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 25 days ago by 43k • written 25 days ago by ★ 2.5k
0
votes
0
replies
192
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 16 days ago by 43k • written 16 days ago by ★ 2.5k
2
votes
0
replies
123
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
24 days ago by Transmitting Science communication ▴ 70
0
votes
0
replies
100
views
News: Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding Programming R
updated 2 days ago by 43k • written 2 days ago by ★ 2.5k
0
votes
0
replies
114
views
News: Online course: Genome Annotation
Genome-Assembly Genome-Annotation
5 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
195
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 23 days ago by 43k • written 23 days ago by ★ 2.5k
0
votes
0
replies
124
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 10 days ago by 43k • written 10 days ago by ★ 2.5k
3
votes
0
replies
212
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 8 days ago by 43k • written 8 days ago by ▴ 60
1
vote
0
replies
186
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
2 days ago by carlopecoraro2 ★ 2.5k
3
votes
0
replies
137
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 11 days ago by 43k • written 11 days ago by ★ 2.5k
0
votes
0
replies
126
views
News: Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis Statistics R
updated 4 days ago by 43k • written 4 days ago by ★ 2.5k
0
votes
0
replies
161
views
News: Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy Python NumPy
updated 4 days ago by 43k • written 4 days ago by • 0
0
votes
0
replies
190
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 18 days ago by 43k • written 18 days ago by 11k
0
votes
0
replies
94
views
News: Cellosaurus release 49 is available
cell biocuration line database news knowledgebase
1 day ago by Amos Bairoch ▴ 120
0
votes
0
replies
166
views
News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 9 days ago by 43k • written 9 days ago by ★ 2.5k
1
vote
0
replies
139
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 23 days ago by 43k • written 23 days ago by ▴ 70
0
votes
0
replies
98
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
12 days ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
134
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 23 days ago by 43k • written 23 days ago by ▴ 70
0
votes
0
replies
130
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 26 days ago by 43k • written 26 days ago by ★ 2.5k
0
votes
0
replies
191
views
News: Online course: Network Analysis in R
NetworkAnalyis R
20 days ago by carlopecoraro2 ★ 2.5k
28 results • Page 1 of 1
Recent Votes
Comment: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: Design matrix Differential expression analysis
A: PCA plot from read count matrix from RNA-Seq
A: PCA plot from read count matrix from RNA-Seq
Answer: Design matrix Differential expression analysis
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Popular Question to Medhat 9.7k
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Recent Replies
Comment: Design matrix Differential expression analysis by Gordon Smyth ★ 7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file by lorena9132 ▴ 10
Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file by Mathew ▴ 20
Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data by Mathew ▴ 20
Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
Comment: Design matrix Differential expression analysis by SHN ▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx by vjanve • 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
Comment: creating batch colum for batch correction by Expert ▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction by ATpoint 82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error by Ruqaiya • 0
This the tool still problematic?
Comment: Segmentation error while using a tool by Ruqaiya • 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool by Ruqaiya • 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool by Mensur Dlakic ★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool by Thanujay S • 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA by Thanujay S • 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool by Ruqaiya • 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
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