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26 results • Page
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News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
15 days ago by
David Langenberger
11k
8
votes
2
replies
772
views
News:
FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
20 days ago by
David Langenberger
11k
3
votes
2
replies
561
views
News:
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling
endocrinology
ML
systems-biology
machine-learning
27 days ago by
Johannes W. Dietrich
• 0
3
votes
0
replies
112
views
News:
Interested in Spatial Omics?
Bioconductor
Spatial-Omics
Spatial-Transcriptomics
updated 2 days ago by
Ram
43k • written 2 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
122
views
News:
Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM
Rlang
Rstats
Rproject
updated 14 days ago by
Ram
43k • written 14 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
121
views
News:
Online Course Introduction to Network Analysis and Modelling
Python
Network-Analysis
updated 14 days ago by
Ram
43k • written 14 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
113
views
News:
Course Functional Programming with R
Rstats
TScourses
Rproject
KeepLearning
Rlang
15 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
115
views
News:
Online course: Genome Annotation
Genome-Assembly
RNA-seq
Genome-Annotation
updated 16 days ago by
Ram
43k • written 16 days ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
127
views
News:
Online Live Course: Introduction to Machine Learning in R
Rstats
TScourses
Rlang
Rproject
updated 14 days ago by
Ram
43k • written 14 days ago by
Transmitting Science communication
▴ 70
1
vote
0
replies
173
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
updated 17 days ago by
Ram
43k • written 19 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
165
views
News:
Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic
Bacterial-Genomics
Pangenomics
updated 28 days ago by
Ram
43k • written 28 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
188
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 7 days ago by
Ram
43k • written 7 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
99
views
News:
8th Berlin Summer School in NGS Data Analysis - Apply Now
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
updated 6 hours ago by
Ram
43k • written 1 day ago by
David Langenberger
11k
0
votes
0
replies
183
views
News:
Online course: Meta-analysis in R
Meta-Analysis
R
updated 14 days ago by
Ram
43k • written 14 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
118
views
News:
Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics
vegan
R
updated 17 days ago by
Ram
43k • written 17 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
142
views
News:
Online course: Food Traceability Using Genomic Tools
Nanopore
Genomic-Tools
Illumina
Food-Traceability
updated 22 days ago by
Ram
43k • written 22 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
80
views
News:
Online course: DNA methylation
Pacbio
Nanopore
DnaMethylation
Evolution
3 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
172
views
News:
Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop
RNA-seq
nextflow
DNA-seq
updated 9 days ago by
Ram
43k • written 9 days ago by
David Langenberger
11k
0
votes
0
replies
203
views
News:
Online course: Reproducibility in Bioinformatics
Singularity
Version-Control
Docker
Containers
updated 28 days ago by
Ram
43k • written 28 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
130
views
News:
upcoming online statistical courses
Statistics
R
Data-Analysis
updated 4 days ago by
Ram
43k • written 5 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
173
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 7 days ago by
Ram
43k • written 7 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
103
views
News:
hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models
GLM
R
updated 1 day ago by
Ram
43k • written 1 day ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
177
views
News:
Online course: Network Analysis in R
NetworkAnalyis
R
11 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
49
views
News:
Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis
Statistics
R
updated 6 hours ago by
Ram
43k • written 9 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
142
views
News:
Deadline Approaching: PETs for Public Health Challenge
privacy
public-health-challenge
updated 10 days ago by
Ram
43k • written 10 days ago by
polarise
▴ 380
0
votes
0
replies
145
views
News:
Online course: Eukaryotic Metabarcoding
Metabarcoding
Biodiversity
R
eDNA
24 days ago by
carlopecoraro2
★ 2.5k
26 results • Page
1 of 1
Recent Votes
Answer: Seurat merge and batch correction
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Answer: Missing protein (VEGF-A) in String db
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Recent Awards •
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ATpoint
82k
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zdiazmar
▴ 30
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hkarakurt
▴ 180
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▴ 70
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bioinfo
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Recent Replies
Comment: Missing protein (VEGF-A) in String db
by
shalespringer
• 0
Thank you for replying here; this helped me figure out why MAPK10 was missing from my results. It was also marked as a pseudogene in the En…
Comment: How to convert plink files to Hapmap Format
by
Sofia
• 0
These are the first lines of the output: (Please is it normal to have NA in the P value column ?) CHR …
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
atowns21
• 0
So I used the barcodes that I created (combos of positions 1-10 and 11-20) and I obtained similar alignment stats as the paper I pulled the…
Comment: How to convert plink files to Hapmap Format
by
Sofia
• 0
Thank you so much, it actually worked!
Answer: Rare Disease Variant Pathway Analysis
by
LauferVA
4.2k
Hi @efc1e545 , First a caveat. the information we most need in order to help guide you to a successful conclusion is not provided in thi…
Answer: Sequence read length shorter than flow cell specification
by
swbarnes2
14k
The company probably had you share your run with someone who needed the extra bases. So you get the extra bases free. Just use them unle…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Ram
43k
Thank you, the `csvtk spread` is super useful. I usually import into R using `lapply` then `Reduce` using `merge` but this might be easier.
Comment: Annovar using R package
by
DKA
▴ 40
Thank you for your guidance. The thing is that I am unfamiliar with using such environments, unfortunately.
Comment: Treatment VS Control in Single Cell RNAseq analysis
by
ATpoint
82k
Open a new question, with details.
Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets
by
ATpoint
82k
I recommend https://bioconductor.org/books/3.18/OSCA.basic/normalization.html as well as the "advanced" section in this book.
Comment: Why gatk VariantAnnotator required bam and coverage files
by
QX
• 0
thank you!
Comment: Treatment VS Control in Single Cell RNAseq analysis
by
kilcdincer
▴ 10
Hello, I have more or less same experimental setting and was wondering how you proceeded with your analysis? Can I reach its GitHub reposit…
Comment: BLAST using both nucleotides and taxonomic local databases
by
GenoMax
141k
> I ask this as some BLAST command fields as scinames or sblastnames do not give any output with a classic nt BLAST If that information is…
Answer: BLAST using both nucleotides and taxonomic local databases
by
5heikki
11k
This has been discussed [many times][1] [1]: https://www.biostars.org/p/76551/
Answer: why renaming Idents in Seurat object doesn't work?
by
Bioinfotec
▴ 10
I think when you give indent to seuObj : ```r Idents(seuObj) <- 'RNA_snn_res.0.1' ``` You may wrongly assign other value to it such as `…
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