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81 results • Page
2 of 2
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Votes
Replies
1
vote
3
replies
283
views
How to assign cell types after integration in scRNA
scRNA-seq
updated 3 days ago by
ATpoint
82k • written 4 days ago by
Francesco
▴ 10
0
votes
0
replies
134
views
STAR total splices (in Log.final) vs collapsed splice junctions (in SJ.out.tab)
STAR
4 days ago by
tnminh89
▴ 10
0
votes
0
replies
137
views
Filter low express genes in microarray data
microarray
4 days ago by
Chris
▴ 260
0
votes
0
replies
565
views
Correlation between cell type prediction scores and individual gene expression in spatial transcriptomic datasets
single-cell
Spatial-Transcriptomics
5 days ago by
biocellbio
• 0
0
votes
0
replies
200
views
Phasing VCF Files and Analyzing Reads with Multiple Variants
haplotypes
vcf
phasing
5 days ago by
HarperReed
• 0
1
vote
0
replies
156
views
Simulation of label-free bottom-up proteomics expression dataset
label-free
bottom-up
lc-ms
proteomics
5 days ago by
KABILAN
▴ 70
0
votes
0
replies
174
views
Running Phylogenetic Analysis With NCBI Genome
population-genetics
phylogenetic
updated 5 days ago by
Ram
43k • written 5 days ago by
SineWave
• 0
0
votes
0
replies
170
views
RNA-seq: full length gene
RNA-seq
updated 5 days ago by
Ram
43k • written 5 days ago by
Nargis
• 0
0
votes
0
replies
153
views
Haplotype Phased Assembly Contigs to Chromosome Annotations
Assembly
phased
Haplotype
Annotation
5 days ago by
turcoa1
• 0
0
votes
0
replies
163
views
Designing single-stable RNA molecules
structure
RNA
6 days ago by
Edna
• 0
0
votes
0
replies
173
views
How to visualize/predict the final transcript from Delly output?
WGS
DELLY
6 days ago by
simplitia
▴ 130
0
votes
1
reply
218
views
Normalize scRNAseq data to housekeeping genes to compare several datasets
RNA-sequencing
housekeeping
Single-cell
normalization
updated 6 days ago by
ATpoint
82k • written 6 days ago by
AaronJaime
• 0
0
votes
0
replies
169
views
Is there a way to increase the automatic label text size in Cytoscape?
Cytoscape
6 days ago by
avocado123
• 0
0
votes
0
replies
156
views
How to calculate correlation coefficient for chipseq?
chipseq
bigwigsummary
correlation
6 days ago by
Emily
▴ 10
1
vote
0
replies
169
views
How to calculate reliable Ka/Ks or dN/dS ratio for genes of interest from VCF file
dnds
kaks
VCF
6 days ago by
rohitsatyam102
▴ 850
0
votes
0
replies
153
views
how to read graph_test output of monocle 3
monocle3
6 days ago by
synat.keam
▴ 100
0
votes
1
reply
489
views
GAPIT p-value significance threshold
GAPIT
p-value
GWAS
updated 6 days ago by
ginellegrenier
• 0 • written 4 months ago by
Clayton
• 0
0
votes
0
replies
151
views
Why not use iBAQ for calculating differential abundance of proteins?
protein
maxquant
6 days ago by
Aspire
▴ 330
0
votes
3
replies
295
views
Highest variable features in single cell data
single-cell
updated 5 days ago by
bk11
★ 2.4k • written 6 days ago by
Kazo
▴ 10
1
vote
3
replies
365
views
PCA plot
DESeq2
PCAplot
updated 3 days ago by
LauferVA
4.2k • written 6 days ago by
Aaliya
▴ 10
0
votes
2
replies
260
views
Annovar using R package
Annovar
gnomAD
R
6 days ago by
DKA
▴ 40
0
votes
5
replies
353
views
Is it possible to get a list of representative genomes from a past RefSeq release?
representative
ncbi
asembly
refseq
updated 6 days ago by
GenoMax
141k • written 7 days ago by
Bertalan_Takacs
▴ 90
0
votes
5
replies
352
views
different FeatureCounts output for the same data
fpkm
Counts
Rsubread
rna-seq
updated 4 days ago by
Istvan Albert
100k • written 7 days ago by
sehriban.buyukkilic
▴ 10
1
vote
2
replies
239
views
alignment result
RNA-seq
samtools
hisat2
6 days ago by
ahmad.sajad4541
• 0
0
votes
11
replies
550
views
How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq libraries?
STARSolo
scRNA-seq
STAR
snRNA-seq
MGI
6 days ago by
atowns21
• 0
1
vote
8
replies
426
views
Downsampling fastq file
downsample
fastq
1 day ago by
marco.barr
▴ 80
0
votes
10
replies
474
views
Low mapping rate with Salmon
RNA-seq
Salmon
Quantification
updated 1 day ago by
i.sudbery
19k • written 9 days ago by
Patadu94
• 0
0
votes
3
replies
320
views
CWl and toil singularity image e.g busybox? Thank you
toil
singularity
updated 2 days ago by
Ram
43k • written 4 months ago by
Fadi
• 0
2
votes
5
replies
920
views
Retrieval of Active site information programmatically
Catalytic
Python
Active
PDB
site
Site
updated 2 days ago by
Wayne
★ 2.0k • written 2.0 years ago by
arinjoy
• 0
4
votes
9
replies
2.1k
views
Legend and hap files for imputation with 38 build
reference
38build
impute
imputation
2 days ago by
anna
▴ 20
1
vote
6
replies
2.8k
views
Segmentation fault using gemma
gemma
gwas
updated 2 days ago by
dimpleadiwal050896
• 0 • written 4.9 years ago by
ggman
▴ 90
81 results • Page
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Your cluster may be missing libraries etc to create the PDF plots (this looks like a cluster job submission) on your cluster. Did you check…
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Can you classify the plasmids based on function (resistance genes they are carrying or some other criteria). Sizes above are indicating a w…
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Are those 20% unaligned reads coming after hyper-editing detection?
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I think your best bet would be to use annotation mapping. You can use the features of your clusters in group 1 and apply them to group 2 to…
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> when I put in the dataset, I am not able to run it for DEG analysis because system asks me to remove the first column which is of gene na…
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Thank you so much for your quick response, I have been searching scientific papers for about a week but have failed to come up with a reaso…
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> however I'm not sure this would be appropriate in my case as the plasmid sequences are obviously much more diverse and vary in size Can…
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You could edit the SAM file but I wonder if this problem is present in your original fastq data file so if not inconvenient do the alignmen…
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Thank you! how would I correct that?
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