Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 53 results • page 1 of 2 • next >
0
votes
0
answers
46
views
0
answers
How to build an index for zebrafish with reference genome and snp file using hisat2?
zebrafish reference genome snp hisat2 written 7 days ago by tara • 20
7
votes
4
answers
4.2k
views
4
answers
Modifying fasta file based on vcf information
vcf fasta reference genome written 5.6 years ago by Jautis • 290 • updated 4 months ago by skanterakis • 110
0
votes
1
answer
315
views
1
answer
About hg38 reference genome indexing
hg38 reference genome written 6 months ago by kwanghoon • 20
0
votes
0
answers
210
views
0
answers
REFERENCE GENOME - merging files
reference genome written 7 months ago by GiuliaAC • 10
2
votes
1
answer
467
views
5 follow
1
answer
Reference mouse genome
fasta alignment reference genome written 9 months ago by atheeth14 • 0 • updated 9 months ago by GenoMax ♦ 95k
0
votes
0
answers
292
views
0
answers
Rearrangement of draft genomes in bacterial strains using reference genome
draft genomes bacterial strains reference genome written 16 months ago by amresharma1 • 0 • updated 14 months ago by Biostar ♦♦ 20
0
votes
0
answers
555
views
0
answers
BwaMemIndexImageCreator fails to generate reference.img file
gatk reference genome index written 17 months ago by fmail1221 • 0 • updated 16 months ago by 7ehuang • 0
0
votes
2
answers
1.0k
views
2
answers
Description of alt loci in ref genome GRCh38.d1.vd1
alternate loci tcga reference genome written 2.3 years ago by Maarten Slagter • 110 • updated 17 months ago by m_two • 0
5
votes
1
answer
405
views
1
answer
Is it a problem that the reference genome is not at the chromosome level?
reference genome scaffolds chromosome written 17 months ago by beausoleilmo • 360 • updated 17 months ago by Brice Sarver • 3.6k
1
vote
2
answers
752
views
2
answers
Sea of Ns in downloaded mm10 from NCBI and GRCm38.p6 primary sequence from Ensemble
reference genome rna-seq written 18 months ago by akh22 • 40
2
votes
2
answers
1.8k
views
2
answers
UK Biobank reference genome?
uk biobank reference genome written 22 months ago by Sal.Leggio63 • 0 • updated 18 months ago by Eric T. • 2.6k
0
votes
0
answers
402
views
0
answers
Ref Genome Conundrum
alignment reference genome dna written 18 months ago by aalith • 10
4
votes
3
answers
636
views
5 follow
3
answers
Forum: When will the hg19/grch37 finally become obsolete?
forum reference genome written 20 months ago by gdaly9000 • 10 • updated 20 months ago by Jeremy Leipzig ♦ 19k
0
votes
0
answers
398
views
0
answers
Mapping reads to reference genome + Denovo assembly
reads reference genome blocks denovo assembly written 20 months ago by Elizabeth • 20
1
vote
1
answer
569
views
1
answer
Which reference genome for the annotation of the 1KG variant data by snpEff?
snpeff reference genome variant annotation written 20 months ago by Nam Le Quang • 70
1
vote
0
answers
895
views
0
answers
Low Mapping percentage with Minimap2 due to contamination
minimap2 reference genome mapping nanopore written 22 months ago by rah • 20
0
votes
1
answer
1.0k
views
1
answer
Problems with the reference genome in Stringtie
stringtie reference genome rna-seq lncrna written 23 months ago by iraia.munoa • 100 • updated 23 months ago by Devon Ryan ♦ 98k
14
votes
1
answer
985
views
5 follow
1
answer
Finding out assembly reference from bam file
snp calling bam reference genome written 2.0 years ago by cmcouto.silva • 30 • updated 2.0 years ago by biobiu • 120
0
votes
1
answer
681
views
1
answer
Comparing VCFs constructed from mapping to different reference genomes
vcf comparisons reference genome written 2.1 years ago by kat • 40
5
votes
1
answer
2.8k
views
1
answer
TCGA CNV/SNP6 Reference Sequence - hg19
tcga reference genome snp cnv hg19 written 6.3 years ago by dirigible2012 • 320 • updated 2.1 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.6k
views
1
answer
reference genome hs37d5 with PhiX
ngs reference genome written 2.3 years ago by SOHAIL • 330 • updated 2.1 years ago by kelso • 20
5
votes
1
answer
877
views
1
answer
Choosing human reference genome and indexing
indexing reference genome rna-seq written 2.3 years ago by Batu • 180 • updated 2.3 years ago by Devon Ryan ♦ 98k
8
votes
0
answers
1.6k
views
7 follow
0
answers
Compatibility between my reference genome and GTF file
alignment reference genome rna-seq hisat2 written 2.3 years ago by Batu • 180
23
votes
2
answers
6.2k
views
13 follow
2
answers
What is the difference between GRCh37 and hs37? And hg19?
assembly hg19 hg38 reference genome hs37 written 2.5 years ago by juanfdelahoz • 50
5
votes
0
answers
1.4k
views
0
answers
Download latest reference genome assembly for exome sequencing alignment and variant calling
reference genome dna sequence alignment written 2.6 years ago by svlachavas • 700 • updated 2.5 years ago by Biostar ♦♦ 20
0
votes
0
answers
612
views
0
answers
Are there minimum requirements from a de novo genome assembly for it to be suitably used as a reference for SNP calling?
assembly reference genome snp wgs written 2.5 years ago by nancy • 90
0
votes
0
answers
483
views
0
answers
Psuedoautosomal regions in reference genome
reference genome par written 2.5 years ago by misterie • 90
0
votes
1
answer
1.2k
views
1
answer
bcftools consensus not working when using -H flag
vcf software error bcftools reference genome written 2.7 years ago by kirannbishwa01 • 1.3k • updated 2.7 years ago by finswimmer ♦ 14k
2
votes
1
answer
1.1k
views
1
answer
Creating a Bowtie2 Index for S.Purpuratus to use in Galaxy
bowtie2 galaxy reference genome bowtie alignment written 2.7 years ago by alice_pieplow • 0 • updated 2.7 years ago by GenoMax ♦ 95k
0
votes
0
answers
1.1k
views
0
answers
GRCh37 -> GRCh38 alternative loci index conversion
assembly bam reference genome written 2.8 years ago by lefthandgergo • 10
<prev • 53 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • India, just now
  • India, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1004 users visited in the last hour
_