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12
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2
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286
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9 follow
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What is the difference between GRCh37 and hs37? And hg19?
assembly hg19 hg38 reference genome hs37 written 26 days ago by juanfdelahoz • 20
0
votes
0
answers
116
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0
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Turning a Reference Genome Into a File With Single Nucleotide Positions (Essentially an ATCGmap.)
bedtools reference genome written 16 days ago by gtasource • 20
4
votes
0
answers
229
views
0
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Download latest reference genome assembly for exome sequencing alignment and variant calling
reference genome dna sequence alignment written 8 weeks ago by svlachavas • 480 • updated 24 days ago by Biostar ♦♦ 20
0
votes
0
answers
91
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0
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Are there minimum requirements from a de novo genome assembly for it to be suitably used as a reference for SNP calling?
assembly reference genome snp wgs written 24 days ago by nancy • 60
0
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0
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66
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0
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Psuedoautosomal regions in reference genome
reference genome par written 4 weeks ago by bwczech • 0
0
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1
answer
274
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1
answer
bcftools consensus not working when using -H flag
vcf software error bcftools reference genome written 3 months ago by kirannbishwa01 • 830 • updated 12 weeks ago by finswimmer ♦ 4.4k
2
votes
1
answer
156
views
1
answer
Creating a Bowtie2 Index for S.Purpuratus to use in Galaxy
bowtie2 galaxy reference genome bowtie alignment written 3 months ago by alice_pieplow • 0 • updated 3 months ago by genomax ♦ 54k
0
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0
answers
185
views
0
answers
GRCh37 -> GRCh38 alternative loci index conversion
assembly bam reference genome written 5 months ago by lefthandgergo • 0
2
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1
answer
262
views
1
answer
Are reference sequences from GENCODE, Ensembl and RefSeq the same if they are called GRCh38.p10, it is just the annotation that varies?
grch38 reference genome annotations rna-seq written 6 months ago by amina.mcdiarmid • 0
1
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0
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358
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0
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drosophila reference genome - flybase >6 - explanation of files
drosophila reference genome written 9 months ago by cpak1981 • 100
4
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2
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839
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5 follow
2
answers
How to extract all the simple repeats from the hg19 reference genome
simple repeats reference genome written 12 months ago by Jackie • 70 • updated 12 months ago by Alex Reynolds ♦ 25k
5
votes
4
answers
2.6k
views
4
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Modifying fasta file based on vcf information
vcf fasta reference genome written 3.2 years ago by Jautis • 260 • updated 14 months ago by adeena_hassan • 40
2
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1
answer
762
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1
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where to download GRCh36
reference genome human written 16 months ago by nkinney06 • 30 • updated 16 months ago by genomax ♦ 54k
3
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0
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633
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0
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Reference genome and reference assembly selection and preparation for bioinformatics analysis
reference genome written 17 months ago by Petr Ponomarenko • 2.5k
0
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0
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643
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0
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What are the flanking regions in alt loci of GRCh38?
alt loci genome grch38 reference genome written 23 months ago by ivar.grytten • 20
1
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0
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956
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0
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How to map BAM file to reference genome "[fai_fetch_seq] The sequence not found"
fasta bam reference genome written 21 months ago by beausoleilmo • 190 • updated 20 months ago by Biostar ♦♦ 20
0
votes
1
answer
743
views
1
answer
Variant calling within and between 2 nematode strains
reads reference genome snp written 23 months ago by standonn • 10 • updated 23 months ago by Medhat ♦ 7.6k
1
vote
1
answer
1.1k
views
1
answer
Alignment of seq reads to a genome, process after STAR?
genome rnaseq reference genome written 2.0 years ago by Biogeek • 280 • updated 2.0 years ago by Devon Ryan ♦ 82k
8
votes
1
answer
856
views
1
answer
23andme files uses GRCh37 or GRCh38 ?
genome 23andme reference genome orientation written 2.2 years ago by ahm3dhany • 10 • updated 2.2 years ago by Devon Ryan ♦ 82k
0
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0
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1.2k
views
0
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How to make an annotation file (.gtf/.gff) for a customized reference genome?
annotation ngs next-gen reference genome rna-seq written 2.2 years ago by Shahzad • 10
1
vote
1
answer
621
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1
answer
Problem with human_g1k_v37
reference genome human_g1k_v37 hg19 written 2.3 years ago by martyferr90 • 30
5
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1
answer
933
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1
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Any way to differentiate from a BAM which minor build human reference genome was used for alignment?
bam reference genome written 2.5 years ago by Irene@Sequencing.com • 220
1
vote
1
answer
617
views
1
answer
rna seq analysis
next-gen reference genome rna-seq written 2.5 years ago by kartikayprasad • 10 • updated 2.5 years ago by andrew.j.skelton73 ♦ 5.2k
4
votes
1
answer
968
views
1
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Position of N nucleotides in reference genome
nucleotide reference genome written 2.8 years ago by QVINTVS_FABIVS_MAXIMVS • 2.1k • updated 2.8 years ago by Alex Reynolds ♦ 25k
2
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2
answers
1.8k
views
2
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Ensembl gene ID conversion to gene name
reference genome rna-seq written 2.8 years ago by Annika Forsingdal • 190 • updated 2.8 years ago by EagleEye ♦ 5.6k
4
votes
2
answers
790
views
2
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Fastq reads mapped to the desired position on reference genome
fastq reference genome mapping bwa written 3.1 years ago by Louis Kok • 10 • updated 3.1 years ago by Alex Reynolds ♦ 25k
0
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0
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1.9k
views
0
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MiSeq Analysis Beginner: First steps after getting MiSeq paired end data
assembly demultiplexing miseq reference genome written 3.1 years ago by Sara S. • 0
8
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2
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6.8k
views
8 follow
2
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How to determine reference genome that was used for alignment given BAM with obscure or no header
reference genome alignment reference bam written 3.2 years ago by Irene@Sequencing.com • 220 • updated 3.2 years ago by Ryan Thompson • 3.4k
15
votes
2
answers
2.3k
views
6 follow
2
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Forum: Pan-genome graphs make the popular science press
forum reference genome pan-genome written 3.2 years ago by Mary ♦ 11k • updated 3.2 years ago by Istvan Albert ♦♦ 77k
1
vote
1
answer
1.3k
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1
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How to obtain chromosome number from given scaffold number
reference genome scaffold snp chromosome number written 3.2 years ago by Parimala Devi • 40 • updated 3.2 years ago by Steven Lakin • 1.4k
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