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<prev • 38 results • page 1 of 2 • next >
13
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1
answer
87
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5 follow
1
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Finding out assembly reference from bam file
snp calling bam reference genome written 3 days ago by cmcouto.silva • 30 • updated 2 days ago by biobiu • 10
0
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1
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96
views
1
answer
Comparing VCFs constructed from mapping to different reference genomes
vcf comparisons reference genome written 4 weeks ago by kwalter • 10
5
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1
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2.2k
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1
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TCGA CNV/SNP6 Reference Sequence - hg19
tcga reference genome snp cnv hg19 written 4.3 years ago by dirigible2012 • 310 • updated 5 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
366
views
1
answer
reference genome hs37d5 with PhiX
ngs reference genome written 3 months ago by SOHAIL • 230 • updated 6 weeks ago by kelso • 20
5
votes
1
answer
209
views
1
answer
Choosing human reference genome and indexing
indexing reference genome rna-seq written 3 months ago by Batu • 110 • updated 3 months ago by Devon Ryan ♦ 87k
6
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0
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314
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6 follow
0
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Compatibility between my reference genome and GTF file
alignment reference genome rna-seq hisat2 written 3 months ago by Batu • 110
0
votes
1
answer
191
views
1
answer
Description of alt loci in ref genome GRCh38.d1.vd1
alternate loci tcga reference genome written 3 months ago by Maarten Slagter • 90
13
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2
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1.1k
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9 follow
2
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What is the difference between GRCh37 and hs37? And hg19?
assembly hg19 hg38 reference genome hs37 written 5 months ago by juanfdelahoz • 20
4
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0
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432
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0
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Download latest reference genome assembly for exome sequencing alignment and variant calling
reference genome dna sequence alignment written 7 months ago by svlachavas • 530 • updated 5 months ago by Biostar ♦♦ 20
0
votes
0
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217
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Are there minimum requirements from a de novo genome assembly for it to be suitably used as a reference for SNP calling?
assembly reference genome snp wgs written 5 months ago by nancy • 60
0
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0
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158
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0
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Psuedoautosomal regions in reference genome
reference genome par written 6 months ago by bwczech • 40
0
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1
answer
488
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1
answer
bcftools consensus not working when using -H flag
vcf software error bcftools reference genome written 8 months ago by kirannbishwa01 • 900 • updated 8 months ago by finswimmer ♦ 8.9k
2
votes
1
answer
370
views
1
answer
Creating a Bowtie2 Index for S.Purpuratus to use in Galaxy
bowtie2 galaxy reference genome bowtie alignment written 8 months ago by alice_pieplow • 0 • updated 8 months ago by genomax ♦ 60k
0
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0
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335
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0
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GRCh37 -> GRCh38 alternative loci index conversion
assembly bam reference genome written 10 months ago by lefthandgergo • 0
2
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1
answer
371
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1
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Are reference sequences from GENCODE, Ensembl and RefSeq the same if they are called GRCh38.p10, it is just the annotation that varies?
grch38 reference genome annotations rna-seq written 11 months ago by amina.mcdiarmid • 0
1
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0
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521
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0
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drosophila reference genome - flybase >6 - explanation of files
drosophila reference genome written 14 months ago by cpak1981 • 100
4
votes
2
answers
1.1k
views
5 follow
2
answers
How to extract all the simple repeats from the hg19 reference genome
simple repeats reference genome written 17 months ago by Jackie • 70 • updated 17 months ago by Alex Reynolds ♦ 27k
5
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4
answers
3.0k
views
4
answers
Modifying fasta file based on vcf information
vcf fasta reference genome written 3.6 years ago by Jautis • 270 • updated 19 months ago by adeena_hassan • 40
2
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1
answer
946
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1
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where to download GRCh36
reference genome human written 21 months ago by nkinney06 • 30 • updated 21 months ago by genomax ♦ 60k
3
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0
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754
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0
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Reference genome and reference assembly selection and preparation for bioinformatics analysis
reference genome written 22 months ago by Petr Ponomarenko • 2.6k
0
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0
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732
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0
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What are the flanking regions in alt loci of GRCh38?
alt loci genome grch38 reference genome written 2.3 years ago by ivar.grytten • 20
1
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0
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1.1k
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0
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How to map BAM file to reference genome "[fai_fetch_seq] The sequence not found"
fasta bam reference genome written 2.2 years ago by beausoleilmo • 230 • updated 2.1 years ago by Biostar ♦♦ 20
0
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1
answer
869
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1
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Variant calling within and between 2 nematode strains
reads reference genome snp written 2.4 years ago by standonn • 20 • updated 2.4 years ago by Medhat ♦ 8.1k
1
vote
1
answer
1.4k
views
1
answer
Alignment of seq reads to a genome, process after STAR?
genome rnaseq reference genome written 2.5 years ago by Biogeek • 340 • updated 2.5 years ago by Devon Ryan ♦ 87k
8
votes
1
answer
1.0k
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1
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23andme files uses GRCh37 or GRCh38 ?
genome 23andme reference genome orientation written 2.6 years ago by ahm3dhany • 10 • updated 2.6 years ago by Devon Ryan ♦ 87k
0
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0
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1.4k
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0
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How to make an annotation file (.gtf/.gff) for a customized reference genome?
annotation ngs next-gen reference genome rna-seq written 2.6 years ago by Shahzad • 10
1
vote
1
answer
740
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1
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Problem with human_g1k_v37
reference genome human_g1k_v37 hg19 written 2.7 years ago by martyferr90 • 30
5
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1
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1.0k
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1
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Any way to differentiate from a BAM which minor build human reference genome was used for alignment?
bam reference genome written 2.9 years ago by Irene@Sequencing.com • 230
1
vote
1
answer
676
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1
answer
rna seq analysis
next-gen reference genome rna-seq written 2.9 years ago by kartikayprasad • 10 • updated 2.9 years ago by andrew.j.skelton73 ♦ 5.5k
4
votes
1
answer
1.1k
views
1
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Position of N nucleotides in reference genome
nucleotide reference genome written 3.2 years ago by QVINTVS_FABIVS_MAXIMVS • 2.2k • updated 3.2 years ago by Alex Reynolds ♦ 27k
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