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Showing: reference genome • reset
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5
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122
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Choosing human reference genome and indexing
indexing reference genome rna-seq written 15 days ago by Batu • 100 • updated 15 days ago by Devon Ryan ♦ 85k
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0
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196
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6 follow
0
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Compatibility between my reference genome and GTF file
alignment reference genome rna-seq hisat2 written 19 days ago by Batu • 100
1
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0
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145
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0
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reference genome hs37d5 with PhiX
ngs reference genome written 17 days ago by SOHAIL • 220
0
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1
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94
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1
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Description of alt loci in ref genome GRCh38.d1.vd1
alternate loci tcga reference genome written 24 days ago by Maarten Slagter • 80
12
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2
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567
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9 follow
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What is the difference between GRCh37 and hs37? And hg19?
assembly hg19 hg38 reference genome hs37 written 12 weeks ago by juanfdelahoz • 20
4
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0
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298
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Download latest reference genome assembly for exome sequencing alignment and variant calling
reference genome dna sequence alignment written 3 months ago by svlachavas • 500 • updated 11 weeks ago by Biostar ♦♦ 20
0
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143
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Are there minimum requirements from a de novo genome assembly for it to be suitably used as a reference for SNP calling?
assembly reference genome snp wgs written 12 weeks ago by nancy • 60
0
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102
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0
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Psuedoautosomal regions in reference genome
reference genome par written 3 months ago by bwczech • 0
0
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1
answer
360
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1
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bcftools consensus not working when using -H flag
vcf software error bcftools reference genome written 5 months ago by kirannbishwa01 • 860 • updated 4 months ago by finswimmer ♦ 6.2k
2
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1
answer
233
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1
answer
Creating a Bowtie2 Index for S.Purpuratus to use in Galaxy
bowtie2 galaxy reference genome bowtie alignment written 5 months ago by alice_pieplow • 0 • updated 5 months ago by genomax ♦ 57k
0
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0
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244
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0
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GRCh37 -> GRCh38 alternative loci index conversion
assembly bam reference genome written 7 months ago by lefthandgergo • 0
2
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1
answer
310
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1
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Are reference sequences from GENCODE, Ensembl and RefSeq the same if they are called GRCh38.p10, it is just the annotation that varies?
grch38 reference genome annotations rna-seq written 8 months ago by amina.mcdiarmid • 0
1
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439
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0
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drosophila reference genome - flybase >6 - explanation of files
drosophila reference genome written 11 months ago by cpak1981 • 100
4
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2
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917
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5 follow
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How to extract all the simple repeats from the hg19 reference genome
simple repeats reference genome written 14 months ago by Jackie • 70 • updated 14 months ago by Alex Reynolds ♦ 26k
5
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4
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2.7k
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4
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Modifying fasta file based on vcf information
vcf fasta reference genome written 3.3 years ago by Jautis • 260 • updated 16 months ago by adeena_hassan • 40
2
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1
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1
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where to download GRCh36
reference genome human written 18 months ago by nkinney06 • 30 • updated 18 months ago by genomax ♦ 57k
3
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684
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0
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Reference genome and reference assembly selection and preparation for bioinformatics analysis
reference genome written 19 months ago by Petr Ponomarenko • 2.5k
0
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676
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What are the flanking regions in alt loci of GRCh38?
alt loci genome grch38 reference genome written 2.1 years ago by ivar.grytten • 20
1
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1.0k
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0
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How to map BAM file to reference genome "[fai_fetch_seq] The sequence not found"
fasta bam reference genome written 23 months ago by beausoleilmo • 190 • updated 22 months ago by Biostar ♦♦ 20
0
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1
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796
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1
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Variant calling within and between 2 nematode strains
reads reference genome snp written 2.1 years ago by standonn • 10 • updated 2.1 years ago by Medhat ♦ 7.9k
1
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1
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1.3k
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1
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Alignment of seq reads to a genome, process after STAR?
genome rnaseq reference genome written 2.2 years ago by Biogeek • 280 • updated 2.2 years ago by Devon Ryan ♦ 85k
8
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1
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925
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1
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23andme files uses GRCh37 or GRCh38 ?
genome 23andme reference genome orientation written 2.3 years ago by ahm3dhany • 10 • updated 2.3 years ago by Devon Ryan ♦ 85k
0
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1.3k
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How to make an annotation file (.gtf/.gff) for a customized reference genome?
annotation ngs next-gen reference genome rna-seq written 2.4 years ago by Shahzad • 10
1
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1
answer
659
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1
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Problem with human_g1k_v37
reference genome human_g1k_v37 hg19 written 2.4 years ago by martyferr90 • 30
5
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1
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974
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1
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Any way to differentiate from a BAM which minor build human reference genome was used for alignment?
bam reference genome written 2.6 years ago by Irene@Sequencing.com • 220
1
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1
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643
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1
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rna seq analysis
next-gen reference genome rna-seq written 2.6 years ago by kartikayprasad • 10 • updated 2.6 years ago by andrew.j.skelton73 ♦ 5.3k
4
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1
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1.0k
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1
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Position of N nucleotides in reference genome
nucleotide reference genome written 2.9 years ago by QVINTVS_FABIVS_MAXIMVS • 2.1k • updated 2.9 years ago by Alex Reynolds ♦ 26k
2
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2
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1.8k
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2
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Ensembl gene ID conversion to gene name
reference genome rna-seq written 3.0 years ago by Annika Forsingdal • 200 • updated 2.9 years ago by EagleEye ♦ 5.7k
4
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2
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827
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2
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Fastq reads mapped to the desired position on reference genome
fastq reference genome mapping bwa written 3.2 years ago by Louis Kok • 10 • updated 3.2 years ago by Alex Reynolds ♦ 26k
0
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0
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MiSeq Analysis Beginner: First steps after getting MiSeq paired end data
assembly demultiplexing miseq reference genome written 3.3 years ago by Sara S. • 0
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