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4
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249
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Forum: When will the hg19/grch37 finally become obsolete?
forum reference genome written 26 days ago by gdaly9000 • 10 • updated 25 days ago by Jeremy Leipzig ♦ 18k
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0
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135
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0
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Mapping reads to reference genome + Denovo assembly
reads reference genome blocks denovo assembly written 5 weeks ago by Elizabeth • 20
1
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1
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114
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1
answer
Which reference genome for the annotation of the 1KG variant data by snpEff?
snpeff reference genome variant annotation written 6 weeks ago by Nam Le Quang • 0
1
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0
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203
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0
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Low Mapping percentage with Minimap2 due to contamination
minimap2 reference genome mapping nanopore written 3 months ago by rah • 20
1
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1
answer
295
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1
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UK Biobank reference genome?
uk biobank reference genome written 3 months ago by Sal.Leggio63 • 0
0
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1
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269
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1
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Problems with the reference genome in Stringtie
stringtie reference genome rna-seq lncrna written 4 months ago by iraia.munoa • 60 • updated 4 months ago by Devon Ryan ♦ 90k
13
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1
answer
234
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5 follow
1
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Finding out assembly reference from bam file
snp calling bam reference genome written 5 months ago by cmcouto.silva • 30 • updated 5 months ago by biobiu • 90
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1
answer
188
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1
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Comparing VCFs constructed from mapping to different reference genomes
vcf comparisons reference genome written 6 months ago by kwalter • 10
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1
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2.4k
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1
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TCGA CNV/SNP6 Reference Sequence - hg19
tcga reference genome snp cnv hg19 written 4.8 years ago by dirigible2012 • 310 • updated 6 months ago by Biostar ♦♦ 20
3
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1
answer
715
views
1
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reference genome hs37d5 with PhiX
ngs reference genome written 8 months ago by SOHAIL • 270 • updated 6 months ago by kelso • 20
5
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1
answer
350
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1
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Choosing human reference genome and indexing
indexing reference genome rna-seq written 8 months ago by Batu • 150 • updated 8 months ago by Devon Ryan ♦ 90k
6
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0
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584
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6 follow
0
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Compatibility between my reference genome and GTF file
alignment reference genome rna-seq hisat2 written 9 months ago by Batu • 150
0
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1
answer
367
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1
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Description of alt loci in ref genome GRCh38.d1.vd1
alternate loci tcga reference genome written 9 months ago by Maarten Slagter • 90
18
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2
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2.5k
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12 follow
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What is the difference between GRCh37 and hs37? And hg19?
assembly hg19 hg38 reference genome hs37 written 11 months ago by juanfdelahoz • 40
4
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665
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0
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Download latest reference genome assembly for exome sequencing alignment and variant calling
reference genome dna sequence alignment written 12 months ago by svlachavas • 560 • updated 11 months ago by Biostar ♦♦ 20
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0
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313
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Are there minimum requirements from a de novo genome assembly for it to be suitably used as a reference for SNP calling?
assembly reference genome snp wgs written 11 months ago by nancy • 70
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248
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0
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Psuedoautosomal regions in reference genome
reference genome par written 11 months ago by bwczech • 70
0
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1
answer
688
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1
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bcftools consensus not working when using -H flag
vcf software error bcftools reference genome written 13 months ago by kirannbishwa01 • 1000 • updated 13 months ago by finswimmer ♦ 11k
2
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1
answer
567
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1
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Creating a Bowtie2 Index for S.Purpuratus to use in Galaxy
bowtie2 galaxy reference genome bowtie alignment written 14 months ago by alice_pieplow • 0 • updated 14 months ago by genomax ♦ 68k
0
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0
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514
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0
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GRCh37 -> GRCh38 alternative loci index conversion
assembly bam reference genome written 15 months ago by lefthandgergo • 0
2
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1
answer
505
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1
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Are reference sequences from GENCODE, Ensembl and RefSeq the same if they are called GRCh38.p10, it is just the annotation that varies?
grch38 reference genome annotations rna-seq written 16 months ago by amina.mcdiarmid • 0
1
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685
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drosophila reference genome - flybase >6 - explanation of files
drosophila reference genome written 19 months ago by cpak1981 • 100
5
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2
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1.3k
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2
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How to extract all the simple repeats from the hg19 reference genome
simple repeats reference genome written 22 months ago by Jackie • 70 • updated 22 months ago by Alex Reynolds ♦ 28k
6
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4
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3.3k
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4
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Modifying fasta file based on vcf information
vcf fasta reference genome written 4.0 years ago by Jautis • 270 • updated 2.0 years ago by adeena_hassan • 40
2
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1
answer
1.2k
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1
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where to download GRCh36
reference genome human written 2.2 years ago by nkinney06 • 30 • updated 2.2 years ago by genomax ♦ 68k
3
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0
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886
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0
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Reference genome and reference assembly selection and preparation for bioinformatics analysis
reference genome written 2.3 years ago by Petr Ponomarenko • 2.6k
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846
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0
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What are the flanking regions in alt loci of GRCh38?
alt loci genome grch38 reference genome written 2.8 years ago by ivar.grytten • 20
1
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0
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1.3k
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0
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How to map BAM file to reference genome "[fai_fetch_seq] The sequence not found"
fasta bam reference genome written 2.6 years ago by beausoleilmo • 230 • updated 2.5 years ago by Biostar ♦♦ 20
0
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1
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988
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1
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Variant calling within and between 2 nematode strains
reads reference genome snp written 2.8 years ago by standonn • 20 • updated 2.8 years ago by Medhat ♦ 8.3k
1
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1
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1.6k
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1
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Alignment of seq reads to a genome, process after STAR?
genome rnaseq reference genome written 2.9 years ago by Biogeek • 350 • updated 2.9 years ago by Devon Ryan ♦ 90k
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