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<prev • 49 results • page 1 of 2 • next >
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Rearrangement of draft genomes in bacterial strains using reference genome
draft genomes bacterial strains reference genome written 6 months ago by amresharma1 • 0 • updated 4 months ago by Biostar ♦♦ 20
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0
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270
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0
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BwaMemIndexImageCreator fails to generate reference.img file
gatk reference genome index written 7 months ago by fmail1221 • 0 • updated 6 months ago by 7ehuang • 0
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2
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692
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2
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Description of alt loci in ref genome GRCh38.d1.vd1
alternate loci tcga reference genome written 18 months ago by Maarten Slagter • 110 • updated 7 months ago by m_two • 0
5
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1
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283
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1
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Is it a problem that the reference genome is not at the chromosome level?
reference genome scaffolds chromosome written 7 months ago by beausoleilmo • 300 • updated 7 months ago by Brice Sarver • 3.5k
1
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2
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350
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Sea of Ns in downloaded mm10 from NCBI and GRCm38.p6 primary sequence from Ensemble
reference genome rna-seq written 8 months ago by akh22 • 40
2
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2
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904
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2
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UK Biobank reference genome?
uk biobank reference genome written 13 months ago by Sal.Leggio63 • 0 • updated 8 months ago by Eric T. • 2.6k
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217
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Ref Genome Conundrum
alignment reference genome dna written 8 months ago by aalith • 10
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3
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498
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5 follow
3
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Forum: When will the hg19/grch37 finally become obsolete?
forum reference genome written 10 months ago by gdaly9000 • 10 • updated 10 months ago by Jeremy Leipzig ♦ 19k
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282
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Mapping reads to reference genome + Denovo assembly
reads reference genome blocks denovo assembly written 10 months ago by Elizabeth • 20
1
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1
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327
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1
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Which reference genome for the annotation of the 1KG variant data by snpEff?
snpeff reference genome variant annotation written 10 months ago by Nam Le Quang • 70
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0
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542
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Low Mapping percentage with Minimap2 due to contamination
minimap2 reference genome mapping nanopore written 12 months ago by rah • 20
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1
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620
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1
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Problems with the reference genome in Stringtie
stringtie reference genome rna-seq lncrna written 13 months ago by iraia.munoa • 90 • updated 13 months ago by Devon Ryan ♦ 94k
13
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1
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525
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5 follow
1
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Finding out assembly reference from bam file
snp calling bam reference genome written 14 months ago by cmcouto.silva • 30 • updated 14 months ago by biobiu • 110
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1
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384
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Comparing VCFs constructed from mapping to different reference genomes
vcf comparisons reference genome written 15 months ago by kat • 10
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1
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2.6k
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1
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TCGA CNV/SNP6 Reference Sequence - hg19
tcga reference genome snp cnv hg19 written 5.5 years ago by dirigible2012 • 320 • updated 15 months ago by Biostar ♦♦ 20
3
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1
answer
1.2k
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1
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reference genome hs37d5 with PhiX
ngs reference genome written 18 months ago by SOHAIL • 310 • updated 16 months ago by kelso • 20
5
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1
answer
615
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1
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Choosing human reference genome and indexing
indexing reference genome rna-seq written 18 months ago by Batu • 170 • updated 18 months ago by Devon Ryan ♦ 94k
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1.1k
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7 follow
0
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Compatibility between my reference genome and GTF file
alignment reference genome rna-seq hisat2 written 18 months ago by Batu • 170
22
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2
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13 follow
2
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What is the difference between GRCh37 and hs37? And hg19?
assembly hg19 hg38 reference genome hs37 written 20 months ago by juanfdelahoz • 50
4
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0
answers
996
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Download latest reference genome assembly for exome sequencing alignment and variant calling
reference genome dna sequence alignment written 21 months ago by svlachavas • 650 • updated 20 months ago by Biostar ♦♦ 20
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489
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Are there minimum requirements from a de novo genome assembly for it to be suitably used as a reference for SNP calling?
assembly reference genome snp wgs written 20 months ago by nancy • 80
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380
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Psuedoautosomal regions in reference genome
reference genome par written 20 months ago by misterie • 90
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1
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958
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1
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bcftools consensus not working when using -H flag
vcf software error bcftools reference genome written 22 months ago by kirannbishwa01 • 1.2k • updated 22 months ago by finswimmer ♦ 13k
2
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1
answer
832
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1
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Creating a Bowtie2 Index for S.Purpuratus to use in Galaxy
bowtie2 galaxy reference genome bowtie alignment written 23 months ago by alice_pieplow • 0 • updated 23 months ago by genomax ♦ 80k
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775
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GRCh37 -> GRCh38 alternative loci index conversion
assembly bam reference genome written 2.0 years ago by lefthandgergo • 10
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1
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704
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1
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Are reference sequences from GENCODE, Ensembl and RefSeq the same if they are called GRCh38.p10, it is just the annotation that varies?
grch38 reference genome annotations rna-seq written 2.2 years ago by amina.mcdiarmid • 0
1
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drosophila reference genome - flybase >6 - explanation of files
drosophila reference genome written 2.4 years ago by cpak1981 • 110
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2
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1.8k
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5 follow
2
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How to extract all the simple repeats from the hg19 reference genome
simple repeats reference genome written 2.6 years ago by Jackie • 70 • updated 2.6 years ago by Alex Reynolds ♦ 29k
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4
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3.6k
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4
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Modifying fasta file based on vcf information
vcf fasta reference genome written 4.8 years ago by Jautis • 290 • updated 2.8 years ago by adeena_hassan • 50
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1
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1.5k
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1
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where to download GRCh36
reference genome human written 3.0 years ago by nkinney06 • 30 • updated 3.0 years ago by genomax ♦ 80k
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