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74
votes
21
replies
10k
views
16 follow
Tutorial: Gene Set Enrichment Analysis
enrichment microarray Tutorial GSEA RNA-Seq
updated 2 days ago by • 0 • written 22 months ago by ★ 2.6k
3
votes
0
replies
91
views
Tutorial: Automated dbSNP lookup by rsID position, plus genome build liftover
rsid hg19 liftover hg38 dbsnp
3 days ago by Kevin Blighe 82k
6
votes
4
replies
647
views
Tutorial: Setting up Aspera Connect (ascp) on Linux and macOS
aspera ascp
updated 3 days ago by ▴ 30 • written 6 weeks ago by 64k
10
votes
5
replies
2.0k
views
6 follow
Tutorial: The Machine Learning Technology for The Beginners
machine learning Tutorial
written 4.2 years ago by ▴ 60
23
votes
0
replies
2.0k
views
Tutorial: Building Docker images
singularity docker container
21 days ago by ATpoint 64k
1
vote
1
reply
297
views
Tutorial: Docker denied: requested access to the resource is denied
docker
updated 22 days ago by ★ 2.2k • written 23 days ago by ▴ 10
33
votes
7
replies
7.1k
views
9 follow
Tutorial: Methylation Analysis Tutorial in R_part1
Tutorial cancer methylation R
11 days ago by Hamid Ghaedi ★ 2.6k
37
votes
13
replies
36k
views
9 follow
Tutorial: Using R in Conda
R Tutorial
updated 26 days ago by • 0 • written 2.1 years ago by ▴ 590
16
votes
11
replies
7.0k
views
Tutorial: How to Use Biostars, Part II: Post types, Deleting, (Un)Subscribing, Linking and Bookmarking
meta how-to documentation Tutorial
3 days ago by Ram 36k
12
votes
1
reply
4.3k
views
Tutorial: scRNA-seq CITE-seq-count bioinformatics
RNA-Seq CITE-seq-count Tutorial scRNA-seq
5 days ago by colindaven ★ 4.0k
42
votes
16
replies
20k
views
15 follow
Tutorial: Tutorial: Analyze exome Copy number variation (CNV) in single patient or in population.
GISTIC varscan2 CNV copy-number
updated 6 days ago by 36k • written 6.9 years ago by ★ 2.3k
9
votes
0
replies
3.9k
views
Tutorial: Analysis of dbGaP data on the cloud
AWS dbGaP Cloud
updated 20 days ago by 36k • written 6.5 years ago by 19k
51
votes
19
replies
40k
views
6 follow
Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
chip-seq rna-seq bigwig visualization ucsc tutorial Tutorial
updated 18 days ago by 36k • written 10.3 years ago by 11k
10
votes
2
replies
3.0k
views
Tutorial: How to find PubMed records where you were author (member) as part of a consortium
pubmed
updated 4 days ago by 36k • written 6.7 years ago by 20k
1
vote
0
replies
1.8k
views
Tutorial: Visualizing protein annotations through ProtAnnot
RNA-Seq IGB protein-annotation
updated 9 days ago by 36k • written 6.7 years ago by ▴ 860
1
vote
0
replies
2.4k
views
Tutorial: How to auto-annotate sequences with the Genome Compiler service.
RNA-Seq genome sequence blast
updated 5 days ago by 36k • written 6.7 years ago by ▴ 40
1
vote
0
replies
3.4k
views
Tutorial: embarrassingly easy parallel in Python, Perl and R
parallel
updated 4 days ago by 36k • written 6.7 years ago by ▴ 70
17 results • Page 1 of 1
Recent Votes
Comment: Can IGV simultaneously show alignments for different reference genomes in differ
Why the result of GSEA and ssGSEA is different?
4-group RNAseq experiment- GSEA vs ssGSEA?
Are upset plots bad for differential expression analysis?
Answer: Are upset plots bad for differential expression analysis?
Answer: extracting sequences from a bam file
A: Best Genome Assembler and Genome Annotation tools and pipelines
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Recent Replies
Comment: CWL and Arvados by dariober 13k
I've never used CWL and Arvados. However, snakemake, which I use quite extensively, has the option to export a workflow as [CWL](https://sn…
Comment: phylip format sequence name/header issue by Michael Dondrup 52k
MrBayes will complain if the first 15 characters of the sequences do not lead to unique taxa though.
Answer: phylip format sequence name/header issue by Mensur Dlakic ★ 20k
Phylip format can have an arbitrary number of characters in header, but not all the programs will tolerate it. MrBayes, for example, has no…
Answer: phylip format sequence name/header issue by Michael Dondrup 52k
I assume you have the sequences in a FASTA file. I recommend to shorten the sequences in FASTA format already, then convert to phylip forma…
Comment: Extract sequences from a list of ID by Neel ▴ 20
Thank you....It has been done.
Comment: SNV, CNA, SV by Vincent Laufer ★ 2.2k
what exactly do you want to show about them. do you want to show the order in which they arose? or epistasis between them> ? or any other p…
Comment: Why weblogo of biopython doesn't work? by Plus • 0
Yes. I can try the web version of WebLogo, but I just want to know what kind of problem can induce to make a corrupted file by using Motif.…
Comment: Difference between clusterProfiler and gProfileR by Arup Ghosh 3.0k
> The GO terms output by gprofileR are generally quite similar to those > output by clusterProfiler, but there are small differences due to…
Comment: hgmd variants from Ensembl by Sanjar ▴ 140
Did you figure out how to do this?
Comment: Why weblogo of biopython doesn't work? by Arup Ghosh 3.0k
The `weblogo` module uses the web version of weblogo service and it seems the module is not working as intended. Instead of returning an im…
Comment: Can IGV simultaneously show alignments for different reference genomes in differ by appropiate ▴ 40
Thanks @cmdcolin! It looks great, but being relatively new on the field and having started with IGV, I think I will stick to the latter and…
Comment: Extract sequences from a list of ID by GenoMax 119k
You need to remove `>` from ID's as the warning tells you to do.
Comment: The best way to get gene lengths for 15K+ genes? by manaswwm ▴ 260
From my previous experiences in retrieving data in bulk from biomaRt/Ensembl - it is always better to partition your data into batches befo…
Comment: Can IGV simultaneously show alignments for different reference genomes in differ by cmdcolin ★ 2.3k
disclaimer: I am a jbrowse 2 dev: you could consider jbrowse 2, which can load multiple genomes, visualize synteny, and look at the mapped …
Answer: download just a chromosome from SRA toolkit by ATpoint 64k
No, it is not possible since fastq are raw data without alignment information, hence without chromosomal information.
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